Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7731 136 9e-27 seq104 91.5 3e-13 >seq7731 Length=250 Score = 136 bits (150), Expect = 9e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||||||||| ||||| |||||||| || ||||| ||||| || || | || | |||||| Sbjct 36 GAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATC 95 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||| |||||||||||||||||||| | | ||| || ||||| || Sbjct 96 CTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTC 155 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || ||||| | || | | |||| || ||||| || ||||| || || || Sbjct 156 CTGGATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGT 215 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || ||||| || |||| |||||| Sbjct 216 CTTCCCTGTAAGGGTCTTGACAAAGATCTGCAT 248 >seq104 Length=152162 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 151962 TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTT 152021 || || || ||||| | || ||||| || | | || |||||||| || |||||||| Sbjct 21331 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 21390 Query 152022 TGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTG 152081 ||||||| | || | | ||||||| || ||||| || || |||||||| || || Sbjct 21391 CTTTTGACATTTTCAATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 21450 Query 152082 AGAGTCTTCACGAAGACCTGCAT 152104 |||||||||||||| | |||||| Sbjct 21451 AGAGTCTTCACGAATATCTGCAT 21473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153660563496969