Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq7731 111 1e-19 seq3104 86.0 5e-12 seq1633 86.0 5e-12 seq308 86.0 5e-12 seq104 84.2 2e-11 >seq7731 Length=250 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || |||||||| || |||||| ||||| ||||| || || || ||| | || || Sbjct 40 ACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCG 99 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 |||||||| ||||||||||| | | |||||| |||| || | ||| ||||| ||| Sbjct 100 AGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGG 159 Query 44249 ATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTT 44308 ||||| ||| | | | |||||||| | | |||||||| | || || ||||| Sbjct 160 ATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTTC 219 Query 44309 CCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || |||||||| || ||||| ||||| Sbjct 220 CCTGTAAGGGTCTTGACAAAGATCTGCAT 248 >seq3104 Length=412 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||| ||||||||||||||||||| || | || || || ||| ||| || | Sbjct 205 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTAT-TTTGCC 263 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | ||| |||| || || | | |||||| |||| || || || || || ||||| Sbjct 264 TTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 323 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 |||||| ||||| |||||||| Sbjct 324 GGTCTTAACGAATATTTGCAT 344 >seq1633 Length=565 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 |||||||| ||||||||||||||||||| || | || || || ||| ||| || | Sbjct 361 CCGGCAAAAATCAAACGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGC-C 303 Query 44258 TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAG 44316 || | ||| |||| || || | | |||||| |||| || || || || || ||||| Sbjct 302 TTTTACATTCTCTATTGTATCAGATGGTTCCACTTCCAAAGTGATGGTTTTGCCAGTGAG 243 Query 44317 GGTCTTCACGAAGATTTGCAT 44337 |||||| ||||| |||||||| Sbjct 242 GGTCTTAACGAATATTTGCAT 222 >seq308 Length=9352 Score = 86.0 bits (94), Expect = 5e-12 Identities = 109/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Plus Query 44192 TGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATC 44251 ||||| |||||||| |||||||| || ||||||| || | || || || || || Sbjct 192 TGCTTACCGGCAAATATCAAACGTTGTTGATCTGGTGGAATTCCCTCTTTATC--TTGAA 249 Query 44252 TTCTGC--TTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTC 44309 || ||| || | || |||| ||||||| | |||||| |||| || || || || | Sbjct 250 TTTTGCCTTTTACATTTTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTGC 309 Query 44310 CCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | ||||||||||| ||||| |||||||| Sbjct 310 CAGTGAGGGTCTTAACGAAAATTTGCAT 337 >seq104 Length=152162 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 44198 CCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC 44257 || ||||| |||||||| |||||||||| || | ||||| || || || || ||| Sbjct 4003 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATC--TTGAATTTTGC 4060 Query 44258 -TTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGA 44315 || | ||| |||| ||||||| || ||| || |||| || || || || || |||| Sbjct 4061 CTTTTACATTCTCTATTGTGTCGGAGGGTTCGACTTCCAAAGTGATGGTTTTGCCGGTGA 4120 Query 44316 GGGTCTTCACGAAGATTTGCAT 44337 ||||||| ||||| |||||||| Sbjct 4121 GGGTCTTAACGAAAATTTGCAT 4142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359942845155663