Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20zimbabwensis_20[genbank_20GCA_5F001447665.1_202015-11- 24] 10,839 sequences; 50,795,114 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq104 105 2e-17 seq308 98.7 2e-15 seq389 86.0 2e-11 seq51 86.0 2e-11 >seq104 Length=152162 Score = 105 bits (116), Expect = 2e-17 Identities = 113/149 (76%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||||||||| || ||||| || || || || |||||| Sbjct 5114 AAAATGC---AGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAA 5058 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||||| || || || || ||| || |||||||| ||||| ||||| || || Sbjct 5057 CCCTCAGACACAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGAATTCCACCC 4998 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || ||||| || || ||||| || || || Sbjct 4997 GATCAGCAGCGTCTGATCTTTGCTGGTAA 4969 Score = 105 bits (116), Expect = 2e-17 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 177913 TTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGG 177972 || |||| | || || |||||||| ||||| || |||||||| || || || || || | Sbjct 21481 TTCAAATTATGCAGATATTCGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTG 21422 Query 177973 AAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||||||||||| || || |||||| || |||||||| || ||||| || |||| Sbjct 21421 AACCATCAGACACCATTGAAAATGTCAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTC 21362 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 | || |||||| || | ||||| || || || Sbjct 21361 CTGATCAGCAAAGATTAATCTTTGCAGGTAA 21331 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||||||||| || || || || || ||||| Sbjct 4767 CAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCAGAT 4708 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| ||||||||||| |||||||| || || || Sbjct 4707 ACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAACAG 4648 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 4647 CGGCTTATTTTTGCTGG 4631 Score = 95.1 bits (104), Expect = 3e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| ||||| | || || ||| ||| ||| Sbjct 4139 CAAATTTTCGTTAAGACCCTCACCGGCAAAACCATCACTTTGGAAGTCGAACCCTCCGAC 4080 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 4079 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 4020 Query 178044 CG 178045 || Sbjct 4019 CG 4018 >seq308 Length=9352 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||||||||| || || || || || ||||| Sbjct 965 CAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTAGAAGTTGAGCCGTCAGAT 906 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| ||||||||||| |||||||| || || || Sbjct 905 ACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCTCCAGATCAACAG 846 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 845 CGGCTTATTTTTGCTGG 829 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| ||||| | || |||||| || ||| Sbjct 334 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTGGAACCATCCGAC 275 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || ||||| || ||||| ||||| || || || || ||| Sbjct 274 ACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAACAA 215 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || | || || ||||| || || Sbjct 214 CGTTTGATATTTGCCGGTAAGCA 192 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||||||||| || ||||| || || || || |||||| Sbjct 1312 AAAATGC---AGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAA 1256 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||| | || || || || ||| || |||||||| ||||| || || || || Sbjct 1255 CCCTCAGACTCAATTGAAAATGTAAAAGGTAAAATTCAGGATAAAGAGGGGATTCCACCC 1196 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || || || || || || || || || || Sbjct 1195 GATCAACAGCGTCTCATTTTTGCAGGTAA 1167 >seq389 Length=4972 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| ||||| | || || ||| |||||| Sbjct 4330 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCAGAC 4271 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || ||||||||||| || || || |||||| Sbjct 4270 ACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGCAA 4211 Query 178044 CG 178045 || Sbjct 4210 CG 4209 >seq51 Length=255661 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || || ||||| || ||||| ||||| | || || ||| |||||| Sbjct 643 CAAATTTTCGTTAAGACCCTCACTGGCAAAACCATCACTTTGGAAGTCGAACCATCAGAC 702 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| || || || || ||||||||||| || || || |||||| Sbjct 703 ACAATAGAAAATGTAAAAGGCAAAATACAAGATAAAGAAGGAATTCCACCAGATCAGCAA 762 Query 178044 CG 178045 || Sbjct 763 CG 764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203564032205766