Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq38 91.5 3e-13 >seq38 Length=545037 Score = 91.5 bits (100), Expect = 3e-13 Identities = 228/340 (67%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 ||||| || || |||||||| || || || ||||||||||| | | |||||||| Sbjct 422444 GTGAAAATGTATCTTGCACTAGCAGCATCCTTGCCACCCTGCAGGCGAGTACCAAACTGG 422503 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || || |||| | || || || ||||| || || | || || |||| || | Sbjct 422504 CCAATAGGTAACAGTAAATTGATATTGTTGCTGCCAACAAAGTCATGTGCCAAATTAATA 422563 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTG--TGTTCGGCAACATAAC 281919 || || ||| ||| | | || || |||||||| ||||| ||| ||||| ||| Sbjct 422564 ATAGTTCCCATAAGGCTTGCTTCCCCATGGTGATA--CGCTGACATTTCAGCAACGGAAC 422621 Query 281920 CACTGAACTGTGCTACCTTCACGTCT--GATGTCAAGTTGCGTTTGAAAGCGCAATATAA 281977 | ||||| ||||||||||| ||| ||||| || || |||||| | | | Sbjct 422622 CGGCCAACTGGGCTACCTTCACTTCTCGCTTGTCA--TTACGCTTGAAACAGGTGAACAG 422679 Query 281978 TACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT- 282036 |||||||||||| || || | |||||| || | ||| || ||||| | ||| || Sbjct 422680 TACTTTTCGTTGTCCCGGTTTTAGACCATCCACTAAAGATGGGATGCTCCTTTCGTTGTC 422739 Query 282037 CATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTC 282076 ||| | ||||||||| || || |||| | |||||| Sbjct 422740 CATGTTAC-TGAACAAAATGAGCTCTTTGTTCACGAAGTC 422778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057801189678290