Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq69 120 3e-22 >seq69 Length=365491 Score = 120 bits (132), Expect = 3e-22 Identities = 225/331 (68%), Gaps = 0/331 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 ||||||| | | || || ||||| || |||| |||||||| || || |||| Sbjct 156884 CCTCGTCCCGGGATATGAGCTCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCT 156943 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 ||| ||| ||||||| ||| || || || |||||||| |||||||||| ||||||| Sbjct 156944 TTAGCCAGAATATCGAGGCAAAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACG 157003 Query 17106 CGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGG 17165 | | | ||| ||| | ||| || | || ||||| | | |||| |||| Sbjct 157004 CCACCAGTCGGTCGCTGAACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGG 157063 Query 17166 CTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTA 17225 | || | ||| | ||| || || || ||||| || || | | | | || Sbjct 157064 CCTTCTTCTTGACGCACGGAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGT 157123 Query 17226 GGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGG 17285 ||| ||| || || || || || |||||||||||||| ||||| |||||||| |||| Sbjct 157124 CGTCTTGTATGTAAGTGTCAATCAGCAGGCTGTACATTTCCGAGTGGATGTTCTCGATGG 157183 Query 17286 CTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||| ||||| ||||||||||| || || || Sbjct 157184 CTATTTGAAAGCCGTAAAAGCAGCGAGCCTC 157214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517534712134440