Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq69 152 6e-32 seq21 104 3e-17 >seq69 Length=365491 Score = 152 bits (168), Expect = 6e-32 Identities = 232/328 (71%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 24177 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 24236 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 156904 TCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATCGAGGCA 156963 Query 24237 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAA 24296 || ||| || ||||| || || || || || ||||| || | |||| || | | | Sbjct 156964 AAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCGC--TGA 157021 Query 24297 CCGGCG----CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 24351 ||||| ||| || ||||| ||||||| ||||||||||| || || || | Sbjct 157022 ACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGACGCACG 157081 Query 24352 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 24411 | || ||||| || || || || |||| ||| | | |||| | || || | Sbjct 157082 GAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGTCGTCTTGTATGTAAGTGT 157141 Query 24412 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 24471 |||||| || || ||||||||||| || ||||| || ||||| |||||||| ||||| | Sbjct 157142 CAATCAGCAGGCTGTACATTTCCGAGTGGATGTTCTCGATGGCTATTTGAAAGCCGTAAA 157201 Query 24472 AACATCTAGCCTCGGTAATCTGTACTTC 24499 | || | ||||||||| ||| ||||| Sbjct 157202 AGCAGCGAGCCTCGGTCGCCTGCACTTC 157229 >seq21 Length=749496 Score = 104 bits (114), Expect = 3e-17 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 53142 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 53201 |||||| || |||||||| || ||||| |||||||| ||||| ||||| || |||| Sbjct 54982 GATTAA--ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACG 55039 Query 53202 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 53261 ||| || || || || || ||||||||||| ||||| |||||||||||||| || || | Sbjct 55040 CTTCGACCGATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAA 55099 Query 53262 C 53262 | Sbjct 55100 C 55100 Score = 89.7 bits (98), Expect = 6e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 54262 CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATCCCCCCT 54319 ||||| || ||||| ||| |||| ||||| | || |||| |||| || || || Sbjct 57958 CCCGGCAATGTAGCTCCCAGTGGCGCGAATGCAATGAACGTTGA--GACCAATTCCTCCG 58015 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 || | || || |||| |||||| ||| | ||||| ||||| ||||| || || || Sbjct 58016 GCGTTCTTCGAAATTACGGCGCATTCTTTAAGTGTATCGTAGATACCCTCGATGCTGTCC 58075 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 | |||| ||| ||||| || || | || | | |||||| |||||||| Sbjct 58076 GACTTCATCGTAATCAGAAAGCAACTGCTAAGCTGCGGCTTGCAAGTTCCTGCATTAAAG 58135 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 54491 | |||||| || ||||| || ||||||||||| || | | ||| ||||||| Sbjct 58136 AGGGTAGGCGAGGCGTGAGTGAACCATTTTTCCGACATCAAATTATACGTCT 58187 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 53951 TCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 54010 || || | ||| |||||||| | || | || || | || | |||||||||||| || Sbjct 57540 TCGAATTGGTCGCCCCAAACTTCGTGGAGCCCGGGGCTCTCGTGCGGACACATCAAACAC 57599 Query 54011 CACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 54068 || ||| ||| | ||||| | ||| |||||| ||||| || |||||||| || || || Sbjct 57600 CAATCTTCGT-TTGCTTCAATGCGTCGCATAAACAGATCCGGTATCCAAAGTGCGTAGAA 57658 Query 54069 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 54128 || |||| || | || ||| || || || || || | || || ||||| | | Sbjct 57659 CAAG-TCTCGGGCGCGATTTTCATCTTTGCCCGTGTTTCTCTTTGCATGAAGGAAGTCAA 57717 Query 54129 TAATATCAGAATGCCACGGTTCCAAGTATAT 54159 ||| || | |||||||||||||||||||| Sbjct 57718 AAATGTCCGCGTGCCACGGTTCCAAGTATAT 57748 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| |||||||||||||| || | ||| ||| | ||| || || || |||| Sbjct 54654 TCCAGCCGTAAAAATGCATCGAAGTAATCTTGCCATAGTTTGGACGGGCCATGTGTATAT 54713 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||||| ||||| | ||| || || | || |||||||| | |||||| || Sbjct 54714 TCAGCGATTGCGACTGATCAACGAAAGCCCCACGATCGGCAGCCATGTCGATGATCACCT 54773 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 53045 |||| | ||||||||| | ||||| || ||||||| | || ||||| |||| Sbjct 54774 TTTGCGAAATTTCCCACACCGTTTTGTACAACTCGCGT-ATCTCTTCAGGAA 54824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593709109581840