Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq69 306 4e-78 seq62 84.2 2e-11 >seq69 Length=365491 Score = 306 bits (338), Expect = 4e-78 Identities = 294/371 (79%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || | ||||| ||||||| | ||||||| || ||||| ||||||||||| Sbjct 157248 GGTTGAGCGCTTTTCCCAGGAAGTGCAGGCGACCGAGGCTCGCTGCTTTTACGGCTTTCA 157189 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTCATCGACACGTACGTG 116920 || ||||| |||||| | |||||||||||||| | || || || ||||| ||| | Sbjct 157188 AATAGCCATCGAGAACATCCACTCGGAAATGTA--CAGCCTGCTGATTGACACTTACATA 157131 Query 116921 CGCTCTTCGGAGGAGAAGCTC---CGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTC 116977 | || ||| ||| | | | |||| |||||||| ||||| || ||||||||| Sbjct 157130 CAAGAC---GACGAGCAGCGCAACCATCTGTTCAACGCCATTGAGACCATTCCGTGCGTC 157074 Query 116978 AAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCC-TTCGGCGA 117036 || |||||||||| ||||| ||||| |||||||||| | || || |||| ||| |||| Sbjct 157073 AAGAAGAAGGCCGACTGGGCTCTGCGTTGGATCGCCGACC-AGCGGTCGCCGTTCAGCGA 157015 Query 117037 GCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCAT 117096 || |||||||| || || |||||||||||| | ||||| ||||| ||||| ||| | || Sbjct 157014 CCGACTGGTGGCGTTTGCTGCCGTCGAGGGCATATTCTTCTCGGGAAGTTTTGCCTCGAT 156955 Query 117097 ATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTC 117156 ||| ||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || Sbjct 156954 ATTCTGGCTAAAGAAGCGCGGCCTCATGCCCGGCCTGACGTTCAGCAACGAGCTCATATC 156895 Query 117157 CAGGGACGAGG 117167 | ||||||||| Sbjct 156894 CCGGGACGAGG 156884 Score = 156 bits (172), Expect = 4e-33 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 116625 AATACCCGGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGG 116684 |||| |||||||| ||| || ||||||||||||||||| || || ||||||||||||| Sbjct 157482 AATATCCGGACATTTGGAGCTACTACAAAAAGGCCGAGGCTTCATTTTGGACCGTCGAGG 157423 Query 116685 AGGTGGACCTGTCCAAGGACACGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATT 116744 ||||||||||| || ||||| || ||| |||||| ||||||| ||||||| || | Sbjct 157422 AGGTGGACCTGAGCAGGGACATGACCGATTGGGAGAAATTGAACGCCAACGAGAAGCACT 157363 Query 116745 TCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGT 116790 ||||| | ||||||||||||| ||||| ||| |||||| || || Sbjct 157362 TCATCTCGTACGTGCTGGCCTTCTTCGCGGCCTCCGACGGAATAGT 157317 Score = 82.4 bits (90), Expect = 8e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 117165 AGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGC--GACCGAG 117222 ||||| |||| |||||||| ||||| |||| ||| || || || || |||| || Sbjct 156831 AGGGTTTGCACTGCGACTTCGCCTGCCTGCTTTTCTCCCACCTGAAGC-GCAAGACC-AG 156774 Query 117223 CGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCAC 117282 | || |||| || | ||||| || || ||||| ||| |||||| |||||||| Sbjct 156773 CAAGGAGCGCATCGAGCAGATCATCCGGGAGGCGGTGCTCATTGAGCAGGAGTTCCTCAC 156714 Query 117283 CGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGA 117342 ||| ||||| || || ||| | || | || |||| | ||| |||||||| || Sbjct 156713 CGAGGCGCTTCCCGTCGACCTGATTGGCATGAACTGCGTACTCATGCGTCAATACATAGA 156654 Query 117343 GTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAA 117393 || ||| |||||| | ||||| |||| || | ||| |||| ||||| Sbjct 156653 GTACGTAGCCGACCGTTTGCTGGTCGAATTGAACTGCGACAAGATATACAA 156603 >seq62 Length=382019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||||||||| || || ||| | || || ||||| || || |||| || ||| | | Sbjct 284510 AATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTC 284451 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||||| | | | | | || | |||||| | ||||||||||| || || | ||||| Sbjct 284450 CGACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCA 284391 Query 40809 GCAACGACTCATCTACGCGGGCAAAC 40834 ||| || ||||||| ||| || |||| Sbjct 284390 GCAGCGTCTCATCTTCGCCGGTAAAC 284365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515208361076080