Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq62 107 2e-18 >seq62 Length=382019 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||||| || || |||||||| ||||| || ||||| ||||||||| |||||| | Sbjct 285222 CCAGCGTAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTTC 285281 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | ||| | | ||||| |||||| |||| || | |||||| || || || Sbjct 285282 TTCACGTTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGT 285341 Query 118719 GTTTTTACAAAAATCTGCATGGCT 118742 ||||| || ||||||||||||||| Sbjct 285342 GTTTTCACGAAAATCTGCATGGCT 285365 Score = 98.7 bits (108), Expect = 9e-16 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 118608 ATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGT 118667 || |||||||||||||| || || ||||| ||||||||| |||||| || || | | Sbjct 284095 ATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTTGTCTTCACGTTT 284154 Query 118668 TCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTAC 118726 |||| |||||||| || | || || || | || | |||||||| ||||||||||| || Sbjct 284155 TCGATGGTGTCCGATGGT-TCCACTTCTAGCGTTATTGTTTTGCCCGTCAGAGTTTTGAC 284213 Query 118727 AAAAATCTGCATG 118739 ||| || |||||| Sbjct 284214 AAATATTTGCATG 284226 Score = 89.7 bits (98), Expect = 4e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 118593 TGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATT 118652 || || ||||| |||| || ||||| || || ||||| || ||||||||||| ||| Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 118653 TTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCG 118712 || || || | ||||| || || | || || |||| || | |||||| ||| Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 118713 GTCAGAGTTTTTACAAAAATCTGCATG 118739 ||||||||||| ||||||||||||||| Sbjct 283348 GTCAGAGTTTTCACAAAAATCTGCATG 283374 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 118599 CCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGT 118658 |||||| |||| |||||||| |||||||| || || |||||||| ||| ||| || Sbjct 284654 CCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCGTC 284713 Query 118659 TTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || || | || | ||||| | ||| ||||| | || | || |||||||| | Sbjct 284714 TTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTAAT 284773 Query 118719 GTTTTTACAAAAATCTGCATGGCT 118742 ||||||||||| ||||||||| || Sbjct 284774 GTTTTTACAAAGATCTGCATGCCT 284797 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 118594 GTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTT 118653 |||| || ||| |||||||||||||||| || || || || ||||| |||||| |||| Sbjct 284365 GTTTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTT 284424 Query 118654 TTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGG 118713 || ||| || | || | |||||| | || || |||| || | ||||| |||| Sbjct 284425 TTGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGG 284484 Query 118714 TCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| || ||||| Sbjct 284485 TCAACGTCTTGACAAATATTTGCAT 284509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433821501460636