Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq55 93.3 8e-14 >seq55 Length=397027 Score = 93.3 bits (102), Expect = 8e-14 Identities = 149/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 42477 CTATTATTTTTGGGTATGCTATTTTTTCGAATATAATTTGAGCTATCCTATCACCC--TT 42534 |||||| | ||| || ||||||||||| | |||| |||||||| | ||||||| || Sbjct 197378 CTATTAAATCTGGATACACTATTTTTTCGCAGATAAGCTGAGCTATGCGATCACCCCTTT 197319 Query 42535 ACATACATTAAATTGAGTTGATCCGAAGTTAAATAATAAAACGCCCACGTTTCCTCTATA 42594 || || ||||| | ||| | ||| || |||| |||||| |||||||| || || Sbjct 197318 TCACGCA--AAATTTGTCTTTTCCAAGGTTGAACAATACAACGCCGACGTTTCCCCTGTA 197261 Query 42595 GTCTGAGTCAATTACGCCAGCACCTACGTCTATAAAATAATTATAAGCAAGCCCCGATCT 42654 || || || |||||||| |||||||| || || ||| ||||| ||||| | Sbjct 197260 ATCGCCATCGATCACGCCAGCTCCTACGTCGATGCCATGCTTAACCGCAAGGCCCGAGCG 197201 Query 42655 AGGAGCTATTCTACCGTAGTATCCGTTAGGTA 42686 || |||| | |||||| | || || |||| Sbjct 197200 CGGCGCTACACGGCCGTAGCAACCCTTGGGTA 197169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923177378247320