Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq1 109 6e-19 seq266 107 2e-18 seq148 107 2e-18 seq272 105 8e-18 seq92 104 3e-17 seq59 104 3e-17 seq126 93.3 5e-14 seq62 93.3 5e-14 >seq1 Length=1771200 Score = 109 bits (120), Expect = 6e-19 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||| Sbjct 649417 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 649358 Query 60123 CTATACTACCGAGGA 60137 ||||||||||||||| Sbjct 649357 CTATACTACCGAGGA 649343 >seq266 Length=62768 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 36687 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 36746 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 36747 TATACTACCGAGGA 36760 >seq148 Length=185163 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 170533 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 170474 Query 60125 ATACTACCGAGGAT 60138 |||||||||||||| Sbjct 170473 ATACTACCGAGGAT 170460 >seq272 Length=60726 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 58706 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 58647 Query 60125 ATACTACCGAGGATTG 60140 ||||||||||||| || Sbjct 58646 ATACTACCGAGGACTG 58631 >seq92 Length=287114 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 98852 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 98911 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 98912 TACTACCGAGGA 98923 >seq59 Length=386964 Score = 104 bits (114), Expect = 3e-17 Identities = 76/88 (86%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 60054 ATGAAAAATT----TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCG 60109 ||||||||| | |||| |||| ||||||||||||| |||| ||||||||||||||| Sbjct 75485 ATGAAAAATACCAGTGCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCG 75544 Query 60110 GACATACTCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||||||||| Sbjct 75545 GGAATACTCACCACTATACTACCGAGGA 75572 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| |||||| |||||| |||| | |||||||||||||| |||||||||||| Sbjct 72847 TCTCCCCGGCCGGGAATGGAACCCGGGTCGCTCGCGTGACAGGCGGGAATACTCACCACT 72906 Query 60125 ATACTACCGAGGA 60137 ||||||||| ||| Sbjct 72907 ATACTACCGTGGA 72919 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| || |||||||||| |||| ||||||||| |||||| ||||||||| || Sbjct 75282 TCTCCCCGGCCGGTAATCGAACCCGGGTCGCCCGCGTGATAGGCGGGAATACTCACCGCT 75223 Query 60125 ATACTACCGAGGA 60137 |||||||||||| Sbjct 75222 TTACTACCGAGGA 75210 >seq126 Length=212693 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||||||| ||||||||||||| |||| ||||||||||||| || ||||||||||| Sbjct 92969 TTCTCCTCGGTCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGTGGGAATACTCACCAC 92910 Query 60124 TATACTACCGAGGA 60137 |||||| |||| || Sbjct 92909 TATACTGCCGAAGA 92896 >seq62 Length=382019 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100 ||||| ||||| ||||| ||||||||||| | || | | ||| ||||| ||||||| Sbjct 284367 TTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTTTT 284426 Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160 ||| | || | | |||||| || |||||| |||| ||| || ||||| || || Sbjct 284427 GCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGGTC 284486 Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184 | |||||| ||||| ||||||||| Sbjct 284487 AACGTCTTGACAAATATTTGCATT 284510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||||||||||||||| ||||| ||||||||||||||||| || | || ||| || || Sbjct 285087 CGCAACACCAAATGCAAGGTGCTTTCCTTTTGAATATTGTAGTCTGACAAAGTACGACCG 285146 Query 43029 TCATCTAGCTGCTTACC 43045 || || |||||||| || Sbjct 285147 TCCTCCAGCTGCTTGCC 285163 Score = 84.2 bits (92), Expect = 3e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 43040 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTT 43099 || |||||| || || |||||||||||||| | ||| | || || |||||| ||| ||| Sbjct 284930 CTCACCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCC-TGAATTT 284988 Query 43100 TTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 43158 | | || | || |||||||||| || |||||| || | || || ||||| |||| Sbjct 284989 TAGCCTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCG 285048 Query 43159 TTAGCGTCTTTACAAAGATTTGCAT 43183 | | |||||| || || || ||||| Sbjct 285049 TCAACGTCTTCACGAAAATCTGCAT 285073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571805570387240