Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq62 91.5 1e-13 >seq62 Length=382019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||||||||||| || ||||| ||||| |||||||| ||||||||||||||||| || || Sbjct 282534 TCCGCCGCGCAATCTTAGCACAAGGTGCAAAGTACTCTCTTTCTGTATGTTGTAATCAGA 282593 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGA 34256 ||| || | || |||| ||||||||||| || Sbjct 282594 AAGCGTGCGTCCATCTTCCAGCTGCTTGCCTGGGA 282628 Score = 87.8 bits (96), Expect = 1e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 34244 TGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATC 34303 ||||| || || || || |||||||| ||||| || | | ||||||||| ||| Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 34304 TTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCG 34363 || ||| | | | |||| ||||| || ||| || || | |||||| ||||| ||| Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 34364 GTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||||||||| |||||||| Sbjct 283348 GTCAGAGTTTTCACAAAAATCTGCAT 283373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323065373288480