Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq69 179 3e-40 seq21 113 4e-20 seq62 98.7 9e-16 >seq69 Length=365491 Score = 179 bits (198), Expect = 3e-40 Identities = 262/362 (72%), Gaps = 14/362 (4%) Strand=Plus/Minus Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 ||||| || |||||||| | ||| ||||| | ||||||||||| |||||| | ||||| Sbjct 157238 TTTTCCCAGGAAGTGCAGGCGACCGAGGCTCGCTGCTTTTACGGCTTTCAAATAGCCATC 157179 Query 57807 GAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGAC 57866 || ||| | || || |||||||| || || || || || ||| | | ||| |||| Sbjct 157178 GAGAACATCCACTCGGAAATGTACAGCCTGCTGATTGACACTTACATACAAGACGACGAG 157119 Query 57867 GAG---AAACGTAGACTGTTCAACGCGATCGAAACAATGCCC-GCGATCGCCAAGAAGGC 57922 || || | | ||||||||||| || || || || || ||| || |||||||| Sbjct 157118 CAGCGCAACCAT---CTGTTCAACGCCATTGAGACCATTCCGTGCG-TCAAGAAGAAGGC 157063 Query 57923 AGAGTGGTCAATCAAATGGATAAAAAGCG-CCA-CGGCCAC-GTTCGCCGAGAGGCTAAT 57979 || ||| | | ||||| || ||| ||| | | |||| ||| | || | Sbjct 157062 CGACTGGGCTCTGCGTTGGATCGC---CGACCAGCGGTCGCCGTTCAGCGACCGACTGGT 157006 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 ||||| || |||||||| || |||||||| ||||| || ||||| | ||||| ||| | Sbjct 157005 GGCGTTTGCTGCCGTCGAGGGCATATTCTTCTCGGGAAGTTTTGCCTCGATATTCTGGCT 156946 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||||| |||||||| ||||||||||||||||| ||||||||| | ||||| || ||||| Sbjct 156945 AAAGAAGCGCGGCCTCATGCCCGGCCTGACGTTCAGCAACGAGCTCATATCCCGGGACGA 156886 Query 58100 GG 58101 || Sbjct 156885 GG 156884 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 57558 GAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAA 57617 |||||||| |||||||||| | ||||||||||| || || || |||||||||||||| Sbjct 157483 GAATATCCGGACATTTGGAGCTACTACAAAAAGGCCGAGGCTTCATTTTGGACCGTCGAG 157424 Query 57618 GAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGA 57652 || || |||||| | ||| ||| ||||||||| Sbjct 157423 GAGGTGGACCTGAGCAGGGACATGACCGATTGGGA 157389 >seq21 Length=749496 Score = 113 bits (124), Expect = 4e-20 Identities = 118/155 (76%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||||| |||||| |||||||||||||| || |||||||||| || |||||||| Sbjct 57614 TTCAATGCGTCGCATAAACAGATCCGGTATCCAAAGTGCGTAGAACAAGTCTCGGGCGCG 57673 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || |||||||| ||||| | || || | ||||| || | |||||| ||||| Sbjct 57674 ATTTTCATCTTTGCCCGTGTTTCTCTTTGCATGAAGGAAGTCAAAAATGTCCGCGTGCCA 57733 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 ||| || | ||| | ||||| || || ||||||| Sbjct 57734 CGGTTCCAAGTATATAGCAAATGCACCAGGTCTCT 57768 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 22460 ACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAA 22519 || ||||| ||||||||||| || | ||| ||| || || || ||| ||| ||||| Sbjct 54988 ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACGCTTCGACC 55047 Query 22520 GATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGC 22579 ||||| ||||| |||| || || || || || || |||||||| || || | || || Sbjct 55048 GATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAACAAGCAGT 55107 Query 22580 GAGTTTCTCAAGCCGT 22595 |||||||||| ||||| Sbjct 55108 GAGTTTCTCACGCCGT 55123 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||| ||| || || || || ||||| || | ||| ||||| |||||| Sbjct 57266 ACCTCGTCGGCGGAACAATATTCCACTATCTCGGTGCACAAATTTGAGCACTTAATCGTG 57325 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 ||||| || || || |||||| ||||| | |||||||| | |||| |||| ||| Sbjct 57326 CCCAAGTTTTGTTGATTCGATTTTCGGTTGCAAGCGTCCTTGTAAACCATGAACGGAGTG 57385 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||||| |||||||| || || || Sbjct 57386 CCCGTCTCGATTTGCGACTCAATTATGGC 57414 >seq62 Length=382019 Score = 98.7 bits (108), Expect = 9e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || || || || || ||||| ||||| |||| || |||||||| Sbjct 283944 CATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTC 283885 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | | |||| || ||| | |||| |||||| || ||| | ||||| || || Sbjct 283884 CGACACTATTGAAAATGTGAAAACTAAAATACAGGACAAAGAGGGCATCCCGCCGGATCA 283825 Query 31312 GCAGCGTCTAATATTCGCTGGCAA 31335 ||||| ||||||| ||||| || Sbjct 283824 ACAGCGGTTAATATTTGCTGGTAA 283801 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || || || || || ||||||||||| |||| || || ||||| Sbjct 285362 CATGCAGATTTTCGTGAAAACACTCACGGGAAAAACGATCACGCTCGAAGTCGAGCCGTC 285303 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| || || | | ||| |||||||||||| | ||||||||||| Sbjct 285302 GGACTCGATTGAAAACGTGAAGAACAAAATTCAAGACAAGGAAGGCATTCCGCCCGACCA 285243 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||||| || || | |||||| Sbjct 285242 GCAGCGCCTGATTTACGCTGG 285222 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || || |||||||| || ||||||||||| |||| || |||||||| Sbjct 283374 CATGCAGATTTTTGTGAAAACTCTGACCGGGAAAACGATCACGCTCGAAGTGGAACCGTC 283315 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||||| || || || || ||||||||| || | || || ||||| Sbjct 283314 CGATACGATCGAAAACGTGAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCA 283255 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACA 31338 ||||| || || || ||||| || || Sbjct 283254 ACAGCGGCTGATCTTTGCTGGTAAGCA 283228 Score = 93.3 bits (102), Expect = 4e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || || |||||||| |||||||| || || | || || ||||| || Sbjct 284226 CATGCAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACCATC 284167 Query 31252 CGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||||| || || ||| | ||| |||||||||||| | ||||| || | Sbjct 284166 GGACACCATCGAAAACGTGAAGACAAA-AATCCAAGACAAGGAAGGCATCCCGCCTGATC 284108 Query 31311 AGCAGCGTCTAATATTCGCTGGCAA 31335 |||||||||| || || || || || Sbjct 284107 AGCAGCGTCTTATTTTTGCGGGTAA 284083 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| ||||| |||| || |||||||| || | || || |||||||| Sbjct 285074 CATGCAGATTTTCGTGAAGACGTTGACGGGAAAAACGATAACTTTGGAGGTGGAACCGTC 285015 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| || || | || || | ||| |||||| |||||| | ||||| ||||| Sbjct 285014 GGACACGGTGGAGAACGTGAAGGCTAAAATTCAGGACAAAGAAGGCATACCGCCTGACCA 284955 Query 31312 GCAGCGTCTAATATTCGCTGG 31332 |||||| || || || ||||| Sbjct 284954 GCAGCGACTGATCTTTGCTGG 284934 Score = 82.4 bits (90), Expect = 7e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| |||| || ||||| || || |||| || ||||||||| Sbjct 284509 ATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTCC 284450 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| ||||| || || | || || |||||| Sbjct 284449 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCAG 284390 Query 31313 CAGCGTCTAATATTCGCTGGCAAAC 31337 |||||||| || ||||| || |||| Sbjct 284389 CAGCGTCTCATCTTCGCCGGTAAAC 284365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445757022189360