Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq69 149 8e-31 seq21 100 4e-16 >seq69 Length=365491 Score = 149 bits (164), Expect = 8e-31 Identities = 226/319 (71%), Gaps = 7/319 (2%) Strand=Plus/Plus Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 ||||| || |||||||| ||||| ||||| || ||||| ||||| || || || ||| Sbjct 156913 AACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATCGAGGCAAAACTTCCC 156972 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCG--- 33749 || ||||| || || || || |||||||| || | |||| || | | | ||||| Sbjct 156973 GAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCGC--TGAACGGCGACC 157030 Query 33750 -CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTT 33807 ||| || ||||| ||||||| ||||||||||| || || || || || || | Sbjct 157031 GCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGACGCACGGAATGGTCT 157090 Query 33808 CTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAA 33867 | ||||| || || |||| ||| | | |||| | ||||| || |||| | Sbjct 157091 CAATGGCGTTGAACAGATGGTTGCGCTGCTCGTCGTCTTGTATGTAAGTGTCAATCAGCA 157150 Query 33868 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAG 33927 | || ||||||||||| || ||||| || ||||| || ||||| ||||| || || | || Sbjct 157151 GGCTGTACATTTCCGAGTGGATGTTCTCGATGGCTATTTGAAAGCCGTAAAAGCAGCGAG 157210 Query 33928 CCTCGGTAATCTGCACTTC 33946 ||||||| ||||||||| Sbjct 157211 CCTCGGTCGCCTGCACTTC 157229 >seq21 Length=749496 Score = 100 bits (110), Expect = 4e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || ||||| || ||||| |||||||| ||||| ||||| || |||| ||| ||| Sbjct 54988 ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACGCTTCGACC 55047 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCAC 62500 || || || || ||||||||||| ||||| |||||||||||||| || || || Sbjct 55048 GATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAAC 55100 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 63189 TCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGAC 63248 ||||| | ||| |||||||| | || | | || | || | |||||||||||| || Sbjct 57540 TCGAATTGGTCGCCCCAAACTTCGTGGAGCCCGGGGCTCTCGTGCGGACACATCAAACAC 57599 Query 63249 CACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63306 || ||| ||| | ||||| | ||| |||||| ||||| || |||||||| || || || Sbjct 57600 CAATCTTCGT-TTGCTTCAATGCGTCGCATAAACAGATCCGGTATCCAAAGTGCGTAGAA 57658 Query 63307 ATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63366 || |||| | | || ||| || || || || || | || || ||||| | | Sbjct 57659 CAAG-TCTCGGGCGCGATTTTCATCTTTGCCCGTGTTTCTCTTTGCATGAAGGAAGTCAA 57717 Query 63367 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 63400 ||| || | |||||||||||||||||||| || Sbjct 57718 AAATGTCCGCGTGCCACGGTTCCAAGTATATAGC 57751 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| |||||||||||||| || | ||| ||| | ||| || || || |||| Sbjct 54654 TCCAGCCGTAAAAATGCATCGAAGTAATCTTGCCATAGTTTGGACGGGCCATGTGTATAT 54713 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| ||||| ||||| | ||| || || | || |||||||| | |||||| || Sbjct 54714 TCAGCGATTGCGACTGATCAACGAAAGCCCCACGATCGGCAGCCATGTCGATGATCACCT 54773 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 62283 |||| | ||||||||| | ||||| || ||||||| | || ||||| |||| Sbjct 54774 TTTGCGAAATTTCCCACACCGTTTTGTACAACTCGCGT-ATCTCTTCAGGAA 54824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629804350212240