Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq21 89.7 5e-13 >seq21 Length=749496 Score = 89.7 bits (98), Expect = 5e-13 Identities = 190/284 (67%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 37282 ATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCA 37341 ||| | | ||| ||||| ||| ||||| | ||| || || | | |||||||||| Sbjct 55188 ATTTTTTCTTTCAGTTCGGCCCAGTCCCACAGATCAGTAGGTGTGATGCCCCACATATCA 55247 Query 37342 TATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATT 37401 || || | || ||||| || | || || | | || ||| |||| ||||| | Sbjct 55248 TACTGCAATATCCCTTTGCTAACGGGTGATCCCTCGTACGTCGCATAGGGTCCCAAGTCC 55307 Query 37402 TTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATA 37461 || || | ||||| || | ||| | |||||||| || || ||||||||||| || | Sbjct 55308 TTGGCCAACTCGCAGCTCGCTTCCAATGCGGCATGGTAAATGGTTTCGAAAATATGACGA 55367 Query 37462 TTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCC 37521 || | | ||||||| | ||||| | ||||| || ||| ||||| | || || Sbjct 55368 TTGAGCTTGAATGCTTCTGCAGACTCGAACGGATAGCGCATTAAAATAAAAGCGTCCGCG 55427 Query 37522 AAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGA 37565 | ||||| || || || |||||||| | |||| | |||| || Sbjct 55428 AGCCCCTGCACTCCAATGCCTATGGGACGATGTCGCATATTGGA 55471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468514943409520