Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq69 147 3e-30 seq21 104 3e-17 >seq69 Length=365491 Score = 147 bits (162), Expect = 3e-30 Identities = 231/328 (70%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 156904 TCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATCGAGGCA 156963 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319 || ||| || ||||| || || || || || ||||| || | |||| || | | | Sbjct 156964 AAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCGC--TGA 157021 Query 36320 CCGGCA----CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 36374 |||| ||| || ||||| ||||||| ||||||||||| || || || | Sbjct 157022 ACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGACGCACG 157081 Query 36375 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 36434 | || ||||| || || || || |||| ||| | | |||| | || || | Sbjct 157082 GAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGTCGTCTTGTATGTAAGTGT 157141 Query 36435 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 36494 |||||| || || ||||||||||| || ||||| || ||||| |||||||| ||||| | Sbjct 157142 CAATCAGCAGGCTGTACATTTCCGAGTGGATGTTCTCGATGGCTATTTGAAAGCCGTAAA 157201 Query 36495 AACATCTAGCCTCGGTAATCTGTACTTC 36522 | || | ||||||||| ||| ||||| Sbjct 157202 AGCAGCGAGCCTCGGTCGCCTGCACTTC 157229 >seq21 Length=749496 Score = 104 bits (114), Expect = 3e-17 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 65173 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 65232 |||||| || |||||||| || ||||| |||||||| ||||| ||||| || |||| Sbjct 54982 GATTAA--ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACG 55039 Query 65233 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 ||| || || || || || ||||||||||| ||||| |||||||||||||| || || | Sbjct 55040 CTTCGACCGATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAA 55099 Query 65293 C 65293 | Sbjct 55100 C 55100 Score = 89.7 bits (98), Expect = 7e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 65982 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 66041 ||||| | ||| |||||||| | || | || || | || | |||||||||||| || Sbjct 57540 TCGAATTGGTCGCCCCAAACTTCGTGGAGCCCGGGGCTCTCGTGCGGACACATCAAACAC 57599 Query 66042 CACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 || ||| ||| | ||||| | ||| |||||| ||||| || |||||||| || || Sbjct 57600 CAATCTTCGT-TTGCTTCAATGCGTCGCATAAACAGATCCGGTATCCAAAGTGCGTAGAA 57658 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 || |||| || | || ||| || || || || || | || || ||||| | | Sbjct 57659 CAAGTCTCGGGCGCGATTTTCATCTTTGCCCGTGTTTCTCTTTGCATGAAGGAAGTCAAA 57718 Query 66161 AATATCATAATGCCACGGTTCCAAGTATATGGC 66193 ||| || |||||||||||||||||||| || Sbjct 57719 AATGTCCGCGTGCCACGGTTCCAAGTATATAGC 57751 Score = 89.7 bits (98), Expect = 7e-13 Identities = 160/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 66293 CCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCT 66350 ||||| || ||||| ||| | || ||||| | || |||| |||| ||||| || Sbjct 57958 CCCGGCAATGTAGCTCCCAGTGGCGCGAATGCAATGAACGTTGA--GACCAATTCCTCCG 58015 Query 66351 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 66410 || | || || |||| |||||| ||| | ||||| ||||| ||||| || || || Sbjct 58016 GCGTTCTTCGAAATTACGGCGCATTCTTTAAGTGTATCGTAGATACCCTCGATGCTGTCC 58075 Query 66411 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 66470 | |||| ||| ||||| || || | || | | |||||| |||||||| Sbjct 58076 GACTTCATCGTAATCAGAAAGCAACTGCTAAGCTGCGGCTTGCAAGTTCCTGCATTAAAG 58135 Query 66471 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 66522 | |||||| || ||||| || ||||||||||| || | | ||| ||||||| Sbjct 58136 AGGGTAGGCGAGGCGTGAGTGAACCATTTTTCCGACATCAAATTATACGTCT 58187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658158953689720