Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq62 96.9 3e-15 >seq62 Length=382019 Score = 96.9 bits (106), Expect = 3e-15 Identities = 108/142 (76%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 139624 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG 139683 ||||||| ||||||| || ||||| || || ||||||||||||||||| ||| |||| | Sbjct 284933 ACCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTC-CTGAATTTTAG 284991 Query 139684 -TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742 || | | ||||| ||||| | || |||||||| | || | ||| || || |||| Sbjct 284992 CCTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGTCA 285051 Query 139743 ACGTTTTTACGAATATTTGCAT 139764 |||| || ||||| || ||||| Sbjct 285052 ACGTCTTCACGAAAATCTGCAT 285073 Score = 86.0 bits (94), Expect = 6e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 139620 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTT 139679 ||||||| || |||| ||||| ||||| || || || || || |||||||| ||||| Sbjct 284365 GTTTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTT 284424 Query 139680 TTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGG 139739 || ||| | | || | ||||||| || ||||| || | || | || || |||| Sbjct 284425 TTGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGG 284484 Query 139740 TCAACGTTTTTACGAATATTTGCAT 139764 ||||||| || || ||||||||||| Sbjct 284485 TCAACGTCTTGACAAATATTTGCAT 284509 Score = 84.2 bits (92), Expect = 2e-11 Identities = 108/144 (75%), Gaps = 4/144 (3%) Strand=Plus/Plus Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682 |||| ||| | || | || |||||||| || ||||||||||| ||||| ||| |||| Sbjct 282954 TACCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTC-TTGAATTTTA 283012 Query 139683 GTTTTAGCTGTTC-CACT-GTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 | ||| | |||| || | || || | || || ||||| | || | |||||| ||||| Sbjct 283013 GCTTTCAC-GTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGT 283071 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 || ||||| |||||||||||||| Sbjct 283072 TAAAGTTTTGACGAATATTTGCAT 283095 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 ||||| ||| | || ||||| |||||||| || || |||||||| ||||| ||||||| Sbjct 284083 TTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTT 284142 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | ||| | ||||| | || ||||| || | || | || ||||| ||| Sbjct 284143 GTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTC 284202 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||||||||| Sbjct 284203 AGAGTTTTGACAAATATTTGCAT 284225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496053564053600