Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq69 150 3e-31 seq21 98.7 1e-15 >seq69 Length=365491 Score = 150 bits (166), Expect = 3e-31 Identities = 234/332 (70%), Gaps = 3/332 (1%) Strand=Plus/Plus Query 49996 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 50055 || || |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 156898 ATGAGCTCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATC 156957 Query 50056 GACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTC--TCT 50113 || ||||| || || ||||| || || || || || ||||| || || |||| || Sbjct 156958 GAGGCAAAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCG 157017 Query 50114 CTCCATAACTGGCGCTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 50172 || | | ||||| || ||||| ||||||| ||||||||||| || || Sbjct 157018 CTGAACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGACG 157077 Query 50173 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 50232 || || || || || ||||| || || |||| ||| | | |||| | ||| Sbjct 157078 CACGGAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGTCGTCTTGTATGTAA 157137 Query 50233 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 50292 || || |||| || || ||||||||||| || ||||| || ||||| || ||||| ||| Sbjct 157138 GTGTCAATCAGCAGGCTGTACATTTCCGAGTGGATGTTCTCGATGGCTATTTGAAAGCCG 157197 Query 50293 TAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 || || || | ||||||||| ||||||||| Sbjct 157198 TAAAAGCAGCGAGCCTCGGTCGCCTGCACTTC 157229 >seq21 Length=749496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 79052 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATG 79111 |||||| || |||||||| || ||||| |||||||| ||||| ||||| || || | Sbjct 54982 GATTAA--ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACG 55039 Query 79112 GTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCA 79171 ||| |||||||| || || ||||||||||| ||||| ||||| || ||||| || || | Sbjct 55040 CTTCGACCGATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAA 55099 Query 79172 C 79172 | Sbjct 55100 C 55100 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 80172 CCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCT 80229 ||||| || ||||| ||| |||| ||||| | || |||| |||| ||||| || Sbjct 57958 CCCGGCAATGTAGCTCCCAGTGGCGCGAATGCAATGAACGTTGA--GACCAATTCCTCCG 58015 Query 80230 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCA 80289 || | || || |||| |||||| ||| | ||||| ||||| ||||| ||||| || Sbjct 58016 GCGTTCTTCGAAATTACGGCGCATTCTTTAAGTGTATCGTAGATACCCTCGATGCTGTCC 58075 Query 80290 TCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 80349 |||| ||| ||||| || || | || | | |||||| |||||||| Sbjct 58076 GACTTCATCGTAATCAGAAAGCAACTGCTAAGCTGCGGCTTGCAAGTTCCTGCATTAAAG 58135 Query 80350 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 80401 | |||||| || ||||| || ||||||||||| |||| | ||| ||||||| Sbjct 58136 AGGGTAGGCGAGGCGTGAGTGAACCATTTTTCCGACATCAAATTATACGTCT 58187 Score = 84.2 bits (92), Expect = 3e-11 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 79861 TCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGAC 79920 ||||| | ||| |||||||| |||| | || || | |||| ||||||||||| || Sbjct 57540 TCGAATTGGTCGCCCCAAACTTCGTGGAGCCCGGGGCTCTCGTGCGGACACATCAAACAC 57599 Query 79921 CACTCTCCATCATCCTTTACT-CGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 || ||| | | | ||| | | ||| |||||| ||||| || |||||||| || || || Sbjct 57600 CAATCTTCGT-TTGCTTCAATGCGTCGCATAAACAGATCCGGTATCCAAAGTGCGTAGAA 57658 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 || |||| || | || || || || || || || | || || ||||| | | Sbjct 57659 CAAG-TCTCGGGCGCGATTTTCATCTTTGCCCGTGTTTCTCTTTGCATGAAGGAAGTCAA 57717 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 80072 ||| || | |||||||||||||||||||| || Sbjct 57718 AAATGTCCGCGTGCCACGGTTCCAAGTATATAGC 57751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718253689420120