Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq69 134 2e-26 seq21 98.7 1e-15 >seq69 Length=365491 Score = 134 bits (148), Expect = 2e-26 Identities = 228/328 (70%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 156904 TCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATCGAGGCA 156963 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 42226 || ||| || ||||| || || || || || ||||| || | |||| || | | | Sbjct 156964 AAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCGC--TGA 157021 Query 42227 CCGGCA----CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 42281 |||| ||| || ||||| ||||||| ||||||||||| || || || | Sbjct 157022 ACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGACGCACG 157081 Query 42282 GCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 42341 | || || || ||||| || || |||| ||| | | |||| | || || | Sbjct 157082 GAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGTCGTCTTGTATGTAAGTGT 157141 Query 42342 CGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGA 42401 | |||| || || |||||||| || || ||||| || ||||| || ||||| ||||| | Sbjct 157142 CAATCAGCAGGCTGTACATTTCCGAGTGGATGTTCTCGATGGCTATTTGAAAGCCGTAAA 157201 Query 42402 AACATCTGGCCTCGGTAACCTGTACTTC 42429 | || | |||||||| |||| ||||| Sbjct 157202 AGCAGCGAGCCTCGGTCGCCTGCACTTC 157229 >seq21 Length=749496 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 71135 GATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACG 71194 |||||| || |||||||| || ||||| ||||| || ||||| ||||| || |||| Sbjct 54982 GATTAA--ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACG 55039 Query 71195 GTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 71254 ||| || || || || || ||||||||||| ||||| |||||||||||||| || || | Sbjct 55040 CTTCGACCGATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAA 55099 Query 71255 C 71255 | Sbjct 55100 C 55100 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/232 (70%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 72255 CCCGGAGATATAGCTTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCT 72312 ||||| || ||||| ||| |||| ||||| | || |||| |||| ||||| || Sbjct 57958 CCCGGCAATGTAGCTCCCAGTGGCGCGAATGCAATGAACGTTGA--GACCAATTCCTCCG 58015 Query 72313 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 72372 || | || || |||| |||||| ||| | ||||| ||||| ||||| || || || Sbjct 58016 GCGTTCTTCGAAATTACGGCGCATTCTTTAAGTGTATCGTAGATACCCTCGATGCTGTCC 58075 Query 72373 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 72432 | |||| ||| ||||| || || | || | | |||||| |||||||| Sbjct 58076 GACTTCATCGTAATCAGAAAGCAACTGCTAAGCTGCGGCTTGCAAGTTCCTGCATTAAAG 58135 Query 72433 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCT 72484 | |||||| || ||||| || ||||||||||| |||| | ||| ||||||| Sbjct 58136 AGGGTAGGCGAGGCGTGAGTGAACCATTTTTCCGACATCAAATTATACGTCT 58187 Score = 96.9 bits (106), Expect = 5e-15 Identities = 126/172 (73%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| |||||||||||||| || | ||| |||| | ||| ||| ||||| |||| Sbjct 54654 TCCAGCCGTAAAAATGCATCGAAGTAATCTTGCCATAGTTTGGACGGGCCATGTGTATAT 54713 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||| || ||||| | ||| || || | || |||||||| | |||||| || Sbjct 54714 TCAGCGATTGCGACTGATCAACGAAAGCCCCACGATCGGCAGCCATGTCGATGATCACCT 54773 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 71038 |||| | ||||||||| | ||||| || ||||||| | || ||||| |||| Sbjct 54774 TTTGCGAAATTTCCCACACCGTTTTGTACAACTCGCGT-ATCTCTTCAGGAA 54824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671125080909080