Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq62 102 8e-17 >seq62 Length=382019 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 143044 ACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTG 143103 ||||||| ||||||| || ||||| || || ||||||||||||||||| |||||| Sbjct 284933 ACCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCCTGAATTTTAGC 284992 Query 143104 TTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAA 143163 || | | ||||||||||||| ||||| || || | ||| | ||| || || ||||| Sbjct 284993 CTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGTCAA 285052 Query 143164 TGTTTTTACGAATATTTGCAT 143184 || || ||||| || ||||| Sbjct 285053 CGTCTTCACGAAAATCTGCAT 285073 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 143043 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTT 143102 |||| ||| | || | || |||||||| || ||||||||||| ||||| |||||| Sbjct 282954 TACCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAG 283013 Query 143103 GTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCA 143162 ||| | | || | ||| || | ||||| || || | ||| | |||||| ||||| | Sbjct 283014 CTTTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTA 283073 Query 143163 ATGTTTTTACGAATATTTGCAT 143184 | ||||| |||||||||||||| Sbjct 283074 AAGTTTTGACGAATATTTGCAT 283095 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 ||||| ||| | || ||||| |||||||| || || |||||||| ||||| |||||| Sbjct 284083 TTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTT 284142 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | ||| | ||||||| ||||| ||||| | || | || ||||| ||| Sbjct 284143 GTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTC 284202 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || ||||||||||| Sbjct 284203 AGAGTTTTGACAAATATTTGCAT 284225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507003733684560