Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq69 178 2e-39 >seq69 Length=365491 Score = 178 bits (196), Expect = 2e-39 Identities = 235/325 (72%), Gaps = 6/325 (2%) Strand=Plus/Minus Query 125232 TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTG 125291 ||||||||||| || ||||| || |||||| | ||||||||||||||| ||| Sbjct 157205 TGCTTTTACGGCTTTCAAATAGCCATCGAGAACATCCACTCGGAAATGTACAGCCTGCTG 157146 Query 125292 ATTGACATGTACATTCG---CGATCCGCAACGTAAACACATGCTCTTTAACGCAATCGAC 125348 ||||||| ||||| | ||| ||| || || || || || ||||| || || Sbjct 157145 ATTGACACTTACATACAAGACGACGAGCAGCGCAACCATCTGTTC---AACGCCATTGAG 157089 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || | |||| | || ||||| | |||| | || ||||||| ||| | | Sbjct 157088 ACCATTCCGTGCGTCAAGAAGAAGGCCGACTGGGCTCTGCGTTGGATCGCCGACCAGCGG 157029 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 || ||| | |||| |||||||||| || || ||||| |||||||| ||||| ||||| Sbjct 157028 TCGCCGTTCAGCGACCGACTGGTGGCGTTTGCTGCCGTCGAGGGCATATTCTTCTCGGGA 156969 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 |||||||| | || || ||||| ||||||||||| ||||||||||| |||||| ||| Sbjct 156968 AGTTTTGCCTCGATATTCTGGCTAAAGAAGCGCGGCCTCATGCCCGGCCTGACGTTCAGC 156909 Query 125529 AACGAGTTTATATCTCGAGACGAGG 125553 |||||| | ||||| || ||||||| Sbjct 156908 AACGAGCTCATATCCCGGGACGAGG 156884 Score = 132 bits (146), Expect = 7e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 125658 ATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAG 125717 || || || ||||| || ||||| | || || ||| | ||||||||||||||||| Sbjct 156733 ATTGAGCAGGAGTTCCTCACCGAGGCGCTTCCCGTCGACCTGATTGGCATGAACTGCGTA 156674 Query 125718 CTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGCCGC 125777 || ||| | | |||||||||| || || || ||| | ||| ||| |||| || | Sbjct 156673 CTCATGCGTCAATACATAGAGTACGTAGCCGACCGTTTGCTGGTCGAATTGAACTGCGAC 156614 Query 125778 AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAG 125837 ||||| ||||| | ||||||| || || |||||| | ||||| || || |||||| Sbjct 156613 AAGATATACAAGGTTGAGAATCCGTTCGACTTCATGGAAATGATATCGCTGGAAGGTAAG 156554 Query 125838 ACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 |||||||||||||| | |||||| |||||||| Sbjct 156553 ACCAACTTTTTCGAAAGGAAGGTGGGCGAGTAC 156521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741043609967080