Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq62 91.5 1e-13 >seq62 Length=382019 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 43977 GTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTT 44036 |||| || || || || | || |||||||| | || | ||| ||||| ||| |||| Sbjct 284365 GTTTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTT 284424 Query 44037 TTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGG 44096 || ||| || | ||| || || | ||| ||||| |||| |||||| ||||| |||| Sbjct 284425 TTGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGG 284484 Query 44097 TTAAAGTCTTCACAAATATTTGCAT 44121 | || ||||| |||||||||||||| Sbjct 284485 TCAACGTCTTGACAAATATTTGCAT 284509 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 43982 CCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGT 44041 || ||||| || || || |||||||| |||| | || ||||| ||| ||||| | Sbjct 282394 CCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCGTT 282453 Query 44042 TTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAA 44101 || || || | | || || | ||||||||| || | ||||| |||||||| || || Sbjct 282454 TTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTCAAC 282513 Query 44102 GTCTTCACAAATATTTGCAT 44121 |||||||||||||| ||||| Sbjct 282514 GTCTTCACAAATATCTGCAT 282533 Score = 82.4 bits (90), Expect = 5e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || || ||||| |||||||| ||||| || | || | ||| ||||| ||| ||| || Sbjct 282673 TTACCAGCAAAAATCAACCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGAATCTTC 282732 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 ||||| | | | |||||| | |||||||| || | || || || || || ||| Sbjct 282733 GCCTTGACATTCTCTATAGTATCAGAAGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTT 282792 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 | ||| ||||||||||||||||| Sbjct 282793 AGAGTTTTCACAAATATTTGCAT 282815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354770322957084