Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq55 105 6e-18 >seq55 Length=397027 Score = 105 bits (116), Expect = 6e-18 Identities = 181/259 (70%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCA-AG-CGGTTAACCTCTT 5297 || || |||||||| || | |||||||||||| | |||| || | | | || || Sbjct 197433 CCAGTTGAACCGAAACCGTTTGCACCGCGGTCGGTGGCATCCAGAGACTGCTCCACTATT 197374 Query 5298 GAACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAA 5357 || |||| | | ||| |||||| || ||||||||||| | || ||| | || | Sbjct 197373 AAAT--CTGGATACACTATTTTTTCGCAGATAAGCTGAGCTATGCGATCACCCCTTTTCA 197316 Query 5358 CCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 | ||| | | ||||| | ||| |||| || || ||||| || || | ||| || Sbjct 197315 CGCAAAATTTGTCTTTTCCAAGGTTGAACAATACAACGCCGACGTTTCCCCTGTAATCGC 197256 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 | ||||| |||||||| || |||||||| || || ||||||||||| || || || | Sbjct 197255 CATCGATCACGCCAGCTCCTACGTCGATGCCATGCTTAACCGCAAGGCCCGAGCGCGGCG 197196 Query 5478 CTATGCGTCCGTAGCAACC 5496 ||| || ||||||||||| Sbjct 197195 CTACACGGCCGTAGCAACC 197177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447740980450960