Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq55 118 9e-22 >seq55 Length=397027 Score = 118 bits (130), Expect = 9e-22 Identities = 140/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 5585 TCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACCTCGAAATCGTTGTGGCCGAAG 5644 |||||||| ||||| ||||| || || ||| | || || || | || | || | | Sbjct 197352 TCGCAGATAAGCTGAGCTATGCGATCACCCCTTTTCACGCAAAATTTGTCTTTTCCAAGG 197293 Query 5645 TTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCGTCTATCACGCCCGCGCCCACG 5704 ||||||| || ||||| ||||| || | ||| ||| | || |||||||| || || ||| Sbjct 197292 TTGAACAATACAACGCCGACGTTTCCCCTGTAATCGCCATCGATCACGCCAGCTCCTACG 197233 Query 5705 TCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCCACGCGGCCGTAGCACCCATCG 5764 |||||| ||||| ||||| ||||| ||||| || || || ||||||||||| || | | Sbjct 197232 TCGATGCCATGCTTAACCGCAAGGCCCGAGCGCGGCGCTACACGGCCGTAGCAACCCTTG 197173 Query 5765 GG--AAGCT 5771 || ||||| Sbjct 197172 GGTAAAGCT 197164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430045578912296