Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq62 96.9 3e-15 >seq62 Length=382019 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||| || || | ||||||||||| || ||||| |||||||| | ||| || ||||||| Sbjct 282680 CAAAAATCAACCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGAATCTTCGCCTTGA 282739 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | | | ||| |||| | || || || | |||||||| |||||||| ||||||| Sbjct 282740 CATTCTCTATAGTATCAGAAGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTTAGAGTTT 282799 Query 94992 TCACAAAGATCTGCAT 95007 ||||||| || ||||| Sbjct 282800 TCACAAATATTTGCAT 282815 Score = 82.4 bits (90), Expect = 7e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 ||||||| | | || || || ||||||||||| || ||||| | ||| || | ||| | Sbjct 283238 CAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATCTTCGTCTTCA 283297 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 || ||| || || | | || || || | |||||| ||||| || || ||||||| Sbjct 283298 CGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCGGTCAGAGTTT 283357 Query 94992 TCACAAAGATCTGCATGC 95009 ||||||| |||||||||| Sbjct 283358 TCACAAAAATCTGCATGC 283375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448281769073880