Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq8 149 1e-31 seq81 127 3e-25 seq3 127 3e-25 >seq8 Length=1028117 Score = 149 bits (164), Expect = 1e-31 Identities = 189/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | | | || |||||||||||||| || || ||||| || || Sbjct 19475 GCGAAGCGACATCGCAAAGTTTTGCGTGATAACATCCAAGGCATTACAAAGCCGGCAATT 19534 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || || || | || ||| |||||||||| | | Sbjct 19535 CGTCGTCTTGCACGTCGTGGTGGTGTGAAACGAATAAGCGGTTTGATCTATGAAGAAACT 19594 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||||| ||| | ||| ||| | | |||||| | || || Sbjct 19595 CGTGGCGTATTGAAGAGCTTTTTGGAGAATGTTGTACGTGATGCAGTGACGTACTGTGAA 19654 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| | ||||| |||| || || ||||||||||| || Sbjct 19655 CACGCAAAGCGAAAGACCGTCACAGCAATGGACGTCGTGTACGCCTTGAAACGTCAGGGA 19714 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| ||||| || ||||| Sbjct 19715 CGTACAATTTACGGCTTTGG 19734 >seq81 Length=324763 Score = 127 bits (140), Expect = 3e-25 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | | || || || |||||||| || || ||||| || || Sbjct 10697 GCAAAGCGTCATCGAAAAGTTTTGCGTGACAATATCCAAGGCATTACGAAGCCGGCAATT 10756 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || ||||| | ||| || | || ||||| | | Sbjct 10757 CGTCGTCTTGCACGTCGTGGTGGTGTAAAGCGGATAAGTGGTCTGATATACGAAGAAACT 10816 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||| | | | |||| | | ||| || | ||| || Sbjct 10817 CGCGGCGTATTGAAAAGCTTTTTGGAAAACGTTGTACGTGACGCAGTGACGTATTGTGAA 10876 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || || | ||||| | || || || |||||||||||||| Sbjct 10877 CACGCAAAGCGAAAGACCGTTACAGCAATGGACGTTGTGTACGCCTTGAAACGTCAAGGA 10936 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| || ||||||||||| Sbjct 10937 CGTACAATCTATGGTTTTGG 10956 Score = 123 bits (136), Expect = 4e-24 Identities = 188/268 (70%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||| | | | | || || || |||||||| || || ||||| || || Sbjct 575 GCAAAGCGTCATCGAAAAGTTTTGCGTGACAATATCCAAGGCATTACGAAGCCGGCAATT 516 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || ||||||||||| || ||||| | ||| || | || ||||| | | Sbjct 515 CGTCGTCTTGCACGTCGTGGTGGTGTAAAGCGGATAAGTGGTCTGATATACGAAGAAACT 456 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| | ||| | | | ||| | | ||| || | ||| || Sbjct 455 CGCGGCGTATTGAAAAGCTTTTTGGAAAATGTTGTACGTGACGCAGTGACATATTGTGAA 396 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| || || | ||||| | || || || |||||||||||||| Sbjct 395 CACGCAAAGCGAAAGACCGTTACAGCAATGGACGTTGTGTACGCCTTGAAACGTCAAGGA 336 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| || ||||||||||| ||| || Sbjct 335 CGTACAATCTATGGTTTTGGTGGTTGAT 308 >seq3 Length=1484969 Score = 127 bits (140), Expect = 3e-25 Identities = 184/260 (71%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | | | || || |||||||| || || || ||||| || || Sbjct 264706 GCGAAGCGACATCGCAAAGTTTTGCGTGACAACATCCAGGGCATTACGAAGCCGGCAATT 264647 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| || || || | || || | |||||||| | | Sbjct 264646 CGTCGACTTGCTCGTCGTGGTGGCGTGAAACGAATAAGCGGTTTAATATATGAAGAAACT 264587 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||||| |||| | ||| || | | ||||| | |||| || Sbjct 264586 CGTGGCGTATTGAAGAGCTTCTTGGAGAATATTGTTCGCGATGCAGTGACCTATTGTGAA 264527 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || |||||||| ||||| | ||||| | || || ||| |||| || || || Sbjct 264526 CACGCGAAGCGTAAGACCGTCACTGCGATGGACGTTGTGTACGCACTGAAGCGACAGGGT 264467 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| |||||| || || || Sbjct 264466 CGTACGATTTACGGATTCGG 264447 Score = 122 bits (134), Expect = 1e-23 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | | | || || |||||||| || || || ||||| || || Sbjct 33649 GCGAAGCGACATCGCAAAGTTTTGCGTGACAACATCCAGGGCATTACGAAGCCGGCAATT 33590 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| |||||||||||||| || ||||| || || | | || || |||| | Sbjct 33589 CGTCGTCTTGCTCGTCGTGGTGGCGTGAAGCGAATCAGCGGCCTAATTTACGAGGAGACT 33530 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| |||| | ||| || | | ||||| | |||| || Sbjct 33529 CGCGGAGTGCTGAAGAGCTTCTTGGAGAATATTGTTCGCGATGCAGTGACCTATTGTGAA 33470 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||||||||| ||||| | ||||| | || || || ||||||| || || Sbjct 33469 CACGCGAAACGTAAGACCGTCACTGCAATGGACGTTGTGTACGCTCTGAAACGACAGGGT 33410 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| ||| || || || || Sbjct 33409 CGTACGATCTACGGATTCGG 33390 Score = 122 bits (134), Expect = 1e-23 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||||| | | | || || |||||||| || || || ||||| || || Sbjct 269598 GCGAAGCGACATCGCAAAGTTTTGCGTGACAACATCCAGGGCATTACGAAGCCGGCAATT 269539 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| || |||||||||||||| || || || | || || | |||||||| | | Sbjct 269538 CGTCGACTTGCTCGTCGTGGTGGCGTGAAACGAATAAGCGGTTTAATATATGAAGAAACT 269479 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| || ||||||| ||| | ||| ||| | | ||| | | |||| || Sbjct 269478 CGTGGCGTATTGAAGAGCTTTTTGGAGAATGTTGTTCGCGATTCAGTGACCTATTGTGAA 269419 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||||||||| ||||| | ||||| | || || ||| |||| || || || Sbjct 269418 CACGCGAAACGTAAGACCGTCACTGCAATGGACGTTGTGTACGCACTGAAGCGACAGGGT 269359 Query 16673 CGTAAGATTTATGGTTTTGG 16692 |||| ||| || || || || Sbjct 269358 CGTACGATCTACGGATTCGG 269339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073661221319