Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq69 149 8e-31 seq21 107 2e-18 >seq69 Length=365491 Score = 149 bits (164), Expect = 8e-31 Identities = 235/334 (70%), Gaps = 7/334 (2%) Strand=Plus/Plus Query 33340 ATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33399 || || |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 156898 ATGAGCTCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATC 156957 Query 33400 GAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33459 || || || ||| || ||||| || || || || |||||||| || | |||| || Sbjct 156958 GAGGCAAAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCG 157017 Query 33460 CCATAACCGGCG----CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTA 33514 | | | ||||| ||| || ||||| ||||||| ||||||||||| || | Sbjct 157018 C--TGAACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGA 157075 Query 33515 CACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACAT 33574 | || || || || || ||||| || || |||| ||| | | |||| | | Sbjct 157076 CGCACGGAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGTCGTCTTGTATGT 157135 Query 33575 AAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATC 33634 |||| || |||| || || ||||||||||| || ||||| || ||||| || ||||| | Sbjct 157136 AAGTGTCAATCAGCAGGCTGTACATTTCCGAGTGGATGTTCTCGATGGCTATTTGAAAGC 157195 Query 33635 CGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 |||| || || | ||||||||| ||| ||||| Sbjct 157196 CGTAAAAGCAGCGAGCCTCGGTCGCCTGCACTTC 157229 >seq21 Length=749496 Score = 107 bits (118), Expect = 2e-18 Identities = 97/121 (80%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62388 |||||| || |||||||| || ||||| |||||||| ||||| ||||| || |||| Sbjct 54982 GATTAA--ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACG 55039 Query 62389 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 ||| ||||| || || || ||||||||||| ||||| |||||||||||||| || || | Sbjct 55040 CTTCGACCGATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAA 55099 Query 62449 C 62449 | Sbjct 55100 C 55100 Score = 95.1 bits (104), Expect = 2e-14 Identities = 163/233 (70%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 63450 CCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTG 63507 |||| || ||||| ||| |||| ||||| | || |||| |||| ||||| || | Sbjct 57959 CCGGCAATGTAGCTCCCAGTGGCGCGAATGCAATGAACGTTGA--GACCAATTCCTCCGG 58016 Query 63508 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCAT 63567 | | || || |||| |||||| ||| | || || ||||||||||| ||||| || Sbjct 58017 CGTTCTTCGAAATTACGGCGCATTCTTTAAGTGTATCGTAGATACCCTCGATGCTGTC-- 58074 Query 63568 CGA--TCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAA 63625 ||| |||| ||| ||||| || || | || | | |||||| |||||||| Sbjct 58075 CGACTTCATCGTAATCAGAAAGCAACTGCTAAGCTGCGGCTTGCAAGTTCCTGCATTAAA 58134 Query 63626 TAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63678 | |||||| || ||||| || ||||||||||| || | | ||| ||||||| Sbjct 58135 GAGGGTAGGCGAGGCGTGAGTGAACCATTTTTCCGACATCAAATTATACGTCT 58187 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 63138 TCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGAC 63197 ||||| | ||| |||||||| | || | || || | || | |||||||||||| || Sbjct 57540 TCGAATTGGTCGCCCCAAACTTCGTGGAGCCCGGGGCTCTCGTGCGGACACATCAAACAC 57599 Query 63198 CACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255 || ||| ||| | ||||| | ||| |||||| ||||| || |||||||| || || || Sbjct 57600 CAATCTTCGT-TTGCTTCAATGCGTCGCATAAACAGATCCGGTATCCAAAGTGCGTAGAA 57658 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 || |||| || | || ||| || || || || || | || || ||||| | | Sbjct 57659 CAAG-TCTCGGGCGCGATTTTCATCTTTGCCCGTGTTTCTCTTTGCATGAAGGAAGTCAA 57717 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 63349 ||| || | |||||||||||||||||||| || Sbjct 57718 AAATGTCCGCGTGCCACGGTTCCAAGTATATAGC 57751 Score = 82.4 bits (90), Expect = 1e-10 Identities = 123/172 (72%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121 |||| |||||||||||||| || | ||| ||| | ||| || || || |||| Sbjct 54654 TCCAGCCGTAAAAATGCATCGAAGTAATCTTGCCATAGTTTGGACGGGCCATGTGTATAT 54713 Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181 ||| ||||| ||||| | ||| || || | || |||||||| | |||||| || Sbjct 54714 TCAGCGATTGCGACTGATCAACGAAAGCCCCACGATCGGCAGCCATGTCGATGATCACCT 54773 Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAA 62232 |||| | ||||||||| | ||||| || ||||||| | || ||||| |||| Sbjct 54774 TTTGCGAAATTTCCCACACCGTTTTGTACAACTCGCGT-ATCTCTTCAGGAA 54824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622934094748280