Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq69 91.5 1e-13 >seq69 Length=365491 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 119632 CTCCGAACCGCTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAG 119691 ||||| || || |||||||||||| |||| ||||| || ||||| || || || | Sbjct 156508 CTCCGCACTTCTGGTACTCGCCCACCTTCCTTTCGAAAAAGTTGGTCTTACCTTCCAGCG 156567 Query 119692 ATATGTTATTCATAAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACT 119751 |||| | | ||| || ||||| ||||| || ||| | ||||||| || ||| | Sbjct 156568 ATATCATTTCCATGAAGTCGAACGGATTCTCAACCTTGTATATCTTGTCGCAGTTCAATT 156627 Query 119752 CGAACAACAGTCGATCTGCCACAAACTCGATGTATTCGCACATGGATTGCG-AATTCATG 119810 ||| || || || || || || |||| ||||||| | ||| || | || | |||||| Sbjct 156628 CGACCAGCAAACGGTCGGCTACGTACTCTATGTATTGACGCAT-GAGTACGCAGTTCATG 156686 Query 119811 CCCAACATAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 || | || |||| || | || | ||| | ||| |||| |||||| ||||| || Sbjct 156687 CCAATCAGGTCGACGGGAAGCGCCTCGGTGAGGAACTCCTGCTCAATGAGCACCGCCTC 156745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478652330139760