Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq69 102 8e-17 >seq69 Length=365491 Score = 102 bits (112), Expect = 8e-17 Identities = 204/300 (68%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 45987 CATCGAGTGCGTGCACACGGAGATGTACAATTTGTTAATTCACCAGTTGATTTCGGACGA 46046 ||||||| | | ||| |||| ||||||| || | ||| || | || ||||| Sbjct 157182 CATCGAGAACATCCACTCGGAAATGTACAGCCTGCTGATTGACACTTACATACAAGACGA 157123 Query 46047 ACACGAGCGCGACACGCTGCTTAATGCGTTTGAACGTATGCCGTGCGTGCGCAAGAAAAC 46106 | ||||| || ||| | || || |||| || |||||||| ||||| | Sbjct 157122 CGAGCAGCGCAACCATCTGTTCAACGCCATTGAGACCATTCCGTGCGTCAAGAAGAAGGC 157063 Query 46107 CGACTGGGCGATGAAGTGGATCAAC-AGCAGCACCGCGACTTTCGCCGAGCGTATGGTGG 46165 ||||||||| || |||||| | | |||| || | ||| ||| || |||||| Sbjct 157062 CGACTGGGCTCTGCGTTGGATCGCCGACCAGCGGT-CGCCGTTCAGCGACCGACTGGTGG 157004 Query 46166 CCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCA 46225 | ||||| || |||||| | || || || || ||||||||| | || || | | | Sbjct 157003 CGTTTGCTGCCGTCGAGGGCATATTCTTCTCGGGAAGTTTTGCCTCGATATTCTGGCTAA 156944 Query 46226 AAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGG 46285 | | ||| ||||||||||||||||||| ||||||||||| ||||| || ||||||| Sbjct 156943 AGAAGCGCGGCCTCATGCCCGGCCTGACGTTCAGCAACGAGCTCATATCCCGGGACGAGG 156884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472002870030720