Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq62 87.8 1e-12 >seq62 Length=382019 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 16788 ATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA 16847 |||| || || ||| | || ||||||||||||||| ||| | ||||| ||||| || Sbjct 283226 ATTGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAA 283285 Query 16848 TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTC 16907 | | | |||||| | | | || ||| || ||| ||| | ||||| ||||| | Sbjct 283286 TCTTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCC 283345 Query 16908 CGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| ||||| |||||||||||||| Sbjct 283346 CGGTCAGAGTTTTCACAAAAATCTGCAT 283373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405079691012170