Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq993 122 6e-23 seq258 122 6e-23 seq233 122 6e-23 seq175 122 6e-23 seq143 122 6e-23 seq141 122 6e-23 seq82 122 6e-23 seq35 118 7e-22 seq221 113 3e-20 seq361 104 2e-17 seq352 104 2e-17 seq109 104 2e-17 seq744 87.8 1e-12 seq62 87.8 1e-12 >seq993 Length=1441 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 1234 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 1175 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1174 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 1140 >seq258 Length=66481 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 38248 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 38307 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 38308 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 38342 >seq233 Length=75887 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 29885 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 29944 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 29945 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 29979 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| | ||||||||| | ||||| || Sbjct 60397 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAATAGATAGGGACAGTAGGAATCTTGT 60456 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 60457 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 60491 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 7378 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 7437 Query 20007 GGTAATATTTAGCCTTA 20023 || |||||||| ||| Sbjct 7438 AGTCGTATTTAGCTTTA 7454 >seq175 Length=119392 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 23881 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 23822 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 23821 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 23787 >seq143 Length=170708 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 156859 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 156800 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 156799 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 156765 >seq141 Length=195697 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 44296 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 44237 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 44236 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 44202 >seq82 Length=326422 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||| ||||||||||| | ||||| || Sbjct 313206 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 313265 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 313266 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 313300 >seq35 Length=533676 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||| ||||||||||||||||||| ||||||||||| | ||||| || Sbjct 228359 AAGCCCGTTCCCATGGCTGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 228418 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 228419 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 228453 >seq221 Length=82606 Score = 113 bits (124), Expect = 3e-20 Identities = 82/95 (86%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||| |||||||||||| |||||||||||||| ||||||||||| | ||||| || Sbjct 41237 AAGCACGTTCCCTTGGCCGTGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGT 41178 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 41177 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 41143 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 |||||||||||| |||||||| |||||||||| || |||||||| | ||||| || Sbjct 10306 AAGCCCGTTCCCATGGCTGTGATTTCGCTAGACAGCAGATAGGGACAGTAGGAATCTTGT 10247 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 10246 TGATCCATTCATGCGCGTCACTAATTAGATGACGA 10212 >seq361 Length=13739 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | ||||||||||| | ||||| || Sbjct 11426 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTTGGCAGTAGATAGGGTCAGTAGGAATCTTGT 11485 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||||||||| |||||| ||||||| Sbjct 11486 TGATCCATTCATGCGCGTCAGTAATTATATGACGA 11520 >seq352 Length=11155 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 3426 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 3485 Query 20007 GGTAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 3486 GCCGGTATTTAGCCTTA 3502 >seq109 Length=262113 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 |||||| ||||||||||||||||||||||| | ||||||||| || | ||||| || Sbjct 200735 AAGCCCCTTCCCTTGGCTGTGGTTTCGCTAAACAGTAGATAGTGGCAGTAGGAATCTTGT 200676 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | | |||||||||||||||||||||||||||| Sbjct 200675 TGGTACATTCATGCGCGTCACTAATTAGATGACGA 200641 Score = 95.1 bits (104), Expect = 8e-15 Identities = 78/95 (82%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGT 25956 |||||| ||||||||||||||||||||||| | ||||||||| || | ||||| || Sbjct 66385 AAGCCCCTTCCCTTGGCTGTGGTTTCGCTAAACAGTAGATAGTGGCAGTAGGAATCTTGT 66444 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | | | || ||| ||||||||||||||||||||| Sbjct 66445 TGGTACATTTATGTGCGTCACTAATTAGATGACGA 66479 >seq744 Length=1896 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 5/76 (7%) Strand=Plus/Plus Query 25921 TGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTTAATCCTTTCATGCGCGTC 25975 ||||||||||||| ||||||||||| | ||||| ||| |||| |||||||||||| Sbjct 1789 TGGTTTCGCTAGACAGTAGATAGGGACAGTAGGAATCTTGTTGATCCATTCATGCGCGTC 1848 Query 25976 ACTAATTAGATGACGA 25991 |||||||||||||||| Sbjct 1849 ACTAATTAGATGACGA 1864 >seq62 Length=382019 Score = 87.8 bits (96), Expect = 1e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237 || ||||| || || || || || || | || | ||||||||||||| |||||| | Sbjct 284934 CCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTCCTGAATTTTAGCC 284993 Query 38238 TTCACATTCTGGACAGTATCTCCAC-TTTCAACTTCTAATGTAATAGTTTTACCCGTCAA 38296 ||||| |||| || || || | || ||| || || || || || ||||| |||||||| Sbjct 284994 TTCACGTTCTCCACCGTGTC-CGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGTCAA 285052 Query 38297 GGTTTTCACGAATATCTGCATG 38318 || |||||||| ||||||||| Sbjct 285053 CGTCTTCACGAAAATCTGCATG 285074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334940329709573