Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq69 156 5e-33 seq21 104 3e-17 >seq69 Length=365491 Score = 156 bits (172), Expect = 5e-33 Identities = 233/328 (71%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 |||||| ||||| || |||||||| ||||| ||||| || ||||| ||||| || ||| Sbjct 156904 TCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTTAGCCAGAATATCGAGGCA 156963 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822 || ||| || ||||| || || || || || ||||| || | |||| || | | | Sbjct 156964 AAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCCACCAGTCGGTCGC--TGA 157021 Query 32823 CCGGCG----CTG-TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAG 32877 ||||| ||| || ||||| ||||||| ||||||||||| || || || | Sbjct 157022 ACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGGCCTTCTTCTTGACGCACG 157081 Query 32878 GCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTAT 32937 | || ||||| || || || || |||| ||| | | |||| | || || | Sbjct 157082 GAATGGTCTCAATGGCGTTGAACAGATGGTTGCGCTGCTCGTCGTCTTGTATGTAAGTGT 157141 Query 32938 CAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGA 32997 |||||| || || ||||||||||| || ||||| || ||||| |||||||| ||||| | Sbjct 157142 CAATCAGCAGGCTGTACATTTCCGAGTGGATGTTCTCGATGGCTATTTGAAAGCCGTAAA 157201 Query 32998 AGCATCTAGCCTCGGTAATCTGTACTTC 33025 |||| | ||||||||| ||| ||||| Sbjct 157202 AGCAGCGAGCCTCGGTCGCCTGCACTTC 157229 >seq21 Length=749496 Score = 104 bits (114), Expect = 3e-17 Identities = 96/121 (79%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62243 |||||| || |||||||| || ||||| |||||||| ||||| ||||| || |||| Sbjct 54982 GATTAA--ACCTGAAATTCGCCGGACAAAACTCTCCGTGTGTATATATTTGAAGTGTACG 55039 Query 62244 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 ||| || || || || || ||||||||||| ||||| |||||||||||||| || || | Sbjct 55040 CTTCGACCGATTCGTTGTTGCCCAAAATTTGGGCAGTGGATGCAGTCGGCATGGGAGCAA 55099 Query 62304 C 62304 | Sbjct 55100 C 55100 Score = 96.9 bits (106), Expect = 4e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 62993 TCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGAC 63052 ||||| | ||| |||||||| | || || || || | || | |||||||||||| || Sbjct 57540 TCGAATTGGTCGCCCCAAACTTCGTGGAGCCCGGGGCTCTCGTGCGGACACATCAAACAC 57599 Query 63053 CACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63110 || ||| ||| | ||||| | ||| |||||| ||||| || |||||||| || || || Sbjct 57600 CAATCTTCGT-TTGCTTCAATGCGTCGCATAAACAGATCCGGTATCCAAAGTGCGTAGAA 57658 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 || |||| || | || ||| || || || || || | || || ||||| | | Sbjct 57659 CAAG-TCTCGGGCGCGATTTTCATCTTTGCCCGTGTTTCTCTTTGCATGAAGGAAGTCAA 57717 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGC 63204 ||| || | |||||||||||||||||||| || Sbjct 57718 AAATGTCCGCGTGCCACGGTTCCAAGTATATAGC 57751 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 63311 ATATAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTT 63368 || ||||| ||| |||| ||||| | || |||| |||| ||||| || || | | Sbjct 57965 ATGTAGCTCCCAGTGGCGCGAATGCAATGAACGTTGA--GACCAATTCCTCCGGCGTTCT 58022 Query 63369 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 63428 | || |||| |||||| ||| | ||||| ||||| ||||| || || || | ||| Sbjct 58023 TCGAAATTACGGCGCATTCTTTAAGTGTATCGTAGATACCCTCGATGCTGTCCGACTTCA 58082 Query 63429 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 63488 | ||| ||||| || || | || | | |||||| |||||||| | ||||| Sbjct 58083 TCGTAATCAGAAAGCAACTGCTAAGCTGCGGCTTGCAAGTTCCTGCATTAAAGAGGGTAG 58142 Query 63489 GAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCT 63533 | || |||||||| ||||||||||| || | | ||| ||||||| Sbjct 58143 GCGAGGCGTGAGTGAACCATTTTTCCGACATCAAATTATACGTCT 58187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633618669966800