Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq62 120 3e-22 >seq62 Length=382019 Score = 120 bits (132), Expect = 3e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||||||||| ||||| |||||||| ||| | || || |||||||||| |||| Sbjct 284510 AATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTC 284451 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| |||| ||||||| |||||||| || |||||||||||||| Sbjct 284450 CGACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCA 284391 Query 25118 ACAGCGGATTATTTTTGCCGGCAAAC 25143 ||||| | || || ||||| |||| Sbjct 284390 GCAGCGTCTCATCTTCGCCGGTAAAC 284365 Score = 105 bits (116), Expect = 6e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| |||||||| ||||| ||||| |||||| | || || | ||||||||| |||| Sbjct 282534 AATGCAGATATTTGTGAAGACGTTGACTGGTAAAACGATTACCCTTGAAGTGGAGCCGTC 282475 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| |||| ||||| |||||||| || ||||| |||||||| Sbjct 282474 GGACACAATCGATAATGTGAAAACGAAAATACAAGACAAAGAGGGAATTCCTCCTGACCA 282415 Query 25118 ACAGCGGATTATTTTTGCCGG 25138 ||||| | ||||||||||| Sbjct 282414 GCAGCGTTTAATTTTTGCCGG 282394 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||| |||| || ||| | || || | |||||||| | || Sbjct 284225 ATGCAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACCATCG 284166 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| ||||||| ||||| ||||| || || ||||| || Sbjct 284165 GACACCATCGAAAACGTGAAGACAAAAATCCAAGACAAGGAAGGCATCCCGCCTGATCAG 284106 Query 25119 CAGCGGATTATTTTTGCCGGCAA 25141 ||||| |||||||||| || || Sbjct 284105 CAGCGTCTTATTTTTGCGGGTAA 284083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/149 (75%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || ||| ||||||| ||| | ||||| |||||||||| |||| Sbjct 283373 ATGCAGATTTTTGTGAAAACTCTGACCGGGAAAACGATCACGCTCGAAGTGGAACCGTCC 283314 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || ||||| ||||| | || | ||| ||||| || || ||||| || ||||| Sbjct 283313 GATACGATCGAAAACGTGAAGACGAAGATTCAG-GACAAGGAGGGTATTCCTCCGGACCA 283255 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAAT 25146 ||||||| | || ||||| || || |||| Sbjct 283254 ACAGCGGCTGATCTTTGCTGGTAAGCAAT 283226 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || ||| | || || || ||||||| | ||||||||| | ||| Sbjct 282815 ATGCAAATATTTGTGAAAACTCTAACTGGAAAGACCATCACTCTGGAAGTGGAGCCTTCT 282756 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || ||||| ||| | || || || | ||| |||||||| || || ||||| || || Sbjct 282755 GATACTATAGAGAATGTCAAGGCGAAGATTCA-AGACAAAGAGGGTATCCCACCAGATCA 282697 Query 25118 ACAGCGGATTATTTTTGCCGGCAA 25141 |||||| | |||||||| || || Sbjct 282696 GCAGCGGTTGATTTTTGCTGGTAA 282673 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| || || ||||||||||| | || ||| | ||||||||| | || Sbjct 283657 AATGCAGATCTTTGTGAAAACGTTGACCGGTAAGACAATAACACTGGAAGTGGAGCCTTC 283598 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || || || || ||||| | |||| ||| ||||| || || ||||| ||||||| Sbjct 283597 GGATACCATTGAAAATGTGAAGACGAAAATTCAA-GACAAGGAGGGCATTCCTCCTGACC 283539 Query 25117 AACAGCGGATTATTTTTGCCGG 25138 | || || | ||||||||||| Sbjct 283538 AGCAACGTTTAATTTTTGCCGG 283517 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||||||||| || || | || || ||| | ||||| |||||||||| |||| Sbjct 283943 ATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTCC 283884 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || |||| ||||| |||||||| || || || || || ||| Sbjct 283883 GACACTATTGAAAATGTGAAAACTAAAATACAGGACAAAGAGGGCATCCCGCCGGATCAA 283824 Query 25119 CAGCGGATTATTTTTGCCGGCAA 25141 |||||| | || ||||| || || Sbjct 283823 CAGCGGTTAATATTTGCTGGTAA 283801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433319111765645