Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq62 113 4e-20 seq21 87.8 2e-12 >seq62 Length=382019 Score = 113 bits (124), Expect = 4e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || || ||||| ||||| | || || ||||||||| | || Sbjct 284509 ATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTCC 284450 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | ||| |||||| |||||||| |||||||||||||| || || Sbjct 284449 GACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCAG 284390 Query 22339 CAACGTCTTATATTTGCCGGCAAAC 22363 || ||||| || || ||||| |||| Sbjct 284389 CAGCGTCTCATCTTCGCCGGTAAAC 284365 Score = 105 bits (116), Expect = 6e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| |||||| | ||||| |||||| |||| || ||||||||| | || Sbjct 283373 ATGCAGATTTTTGTGAAAACTCTGACCGGGAAAACGATCACGCTCGAAGTGGAACCGTCC 283314 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | || || ||||| ||||||||||||||||| || || ||| Sbjct 283313 GATACGATCGAAAACGTGAAGACGAAGATTCAGGACAAGGAGGGTATTCCTCCGGACCAA 283254 Query 22339 CAACGTCTTATATTTGCCGGCAAACA 22364 || || || || ||||| || || || Sbjct 283253 CAGCGGCTGATCTTTGCTGGTAAGCA 283228 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| || |||||||| || | || || |||||||| | | Sbjct 283656 ATGCAGATCTTTGTGAAAACGTTGACCGGTAAGACAATAACACTGGAAGTGGAGCCTTCG 283597 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || |||||||||||||||||||| ||||| || || || Sbjct 283596 GATACCATTGAAAATGTGAAGACGAAAATTCAAGACAAGGAGGGCATTCCTCCTGACCAG 283537 Query 22339 CAACGTCTTATATTTGCCGG 22358 |||||| | || |||||||| Sbjct 283536 CAACGTTTAATTTTTGCCGG 283517 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| ||||| |||||| |||| || || || ||||||| |||||||| | | Sbjct 282816 GATGCAAATATTTGTGAAAACTCTAACTGGAAAGACCATCACTCTGGAAGTGGAGCCTTC 282757 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||||| | || || |||| || ||||||||||| |||||||| ||||| ||||| Sbjct 282756 TGATACTATAGAGAATGTCAAGGCGAAGATTCAAGACAAAGAGGGTATCCCACCAGATCA 282697 Query 22338 ACAACGTCTTATATTTGCCGGCAA 22361 || || | || ||||| || || Sbjct 282696 GCAGCGGTTGATTTTTGCTGGTAA 282673 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || |||||||||||||| || ||| ||||| | || || ||| | | Sbjct 283095 ATGCAAATATTCGTCAAAACTTTAACCGGGAAGACGATCACTTTGGAGGTCGAACCGTCA 283036 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 283035 GATACGATTGAGAACGTGAAAGCTAAAATTCAAGACAAGGAAGGCATACCACCAGATCAG 282976 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || | || |||||||| Sbjct 282975 CAGCGCTTAATTTTTGCCGG 282956 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| | || || ||||| |||| || ||||||||| | || Sbjct 283943 ATGCAAATATTTGTTAAAACGCTCACTGGAAAAACAATCACGCTCGAAGTGGAACCGTCC 283884 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| || ||||| ||||| || || || |||||| Sbjct 283883 GACACTATTGAAAATGTGAAAACTAAAATACAGGACAAAGAGGGCATCCCGCCGGATCAA 283824 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || || | |||||||| || || Sbjct 283823 CAGCGGTTAATATTTGCTGGTAA 283801 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| |||||| | || || ||||| | || || ||||||||| | | Sbjct 284225 ATGCAAATATTTGTCAAAACTCTGACGGGCAAAACAATAACGCTAGAAGTGGAACCATCG 284166 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || |||||| ||||||||||| || || || || ||||| Sbjct 284165 GACACCATCGAAAACGTGAAGACAAAAATCCAAGACAAGGAAGGCATCCCGCCTGATCAG 284106 Query 22339 CAACGTCTTATATTTGCCGGCAA 22361 || |||||||| ||||| || || Sbjct 284105 CAGCGTCTTATTTTTGCGGGTAA 284083 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || || || ||||||||| | || ||||||||||| | | Sbjct 282533 ATGCAGATATTTGTGAAGACGTTGACTGGTAAAACGATTACCCTTGAAGTGGAGCCGTCG 282474 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||||| |||||||| ||||| ||||| || || || Sbjct 282473 GACACAATCGATAATGTGAAAACGAAAATACAAGACAAAGAGGGAATTCCTCCTGACCAG 282414 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||| | || |||||||| Sbjct 282413 CAGCGTTTAATTTTTGCCGG 282394 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| |||||||| || || | || || || || || | || Sbjct 284793 ATGCAGATCTTTGTAAAAACATTAACCGGCAAGACTATTACGCTGGAGGTTGAGCCTTCC 284734 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || |||||||| |||||||| ||||||||||||||| Sbjct 284733 GACACTATTGATAACGTGAAGACGAAGATTCAAGATAAGGAGGGAATTCCACCCGATCAA 284674 Query 22339 CAACGTCTTATATTTGCCGG 22358 || ||||| || || || || Sbjct 284673 CAGCGTCTAATCTTCGCTGG 284654 >seq21 Length=749496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 130/182 (71%), Gaps = 8/182 (4%) Strand=Plus/Plus Query 129983 GCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTA 130042 ||||||||||||||| ||| | | | ||||| | ||| |||||||| ||| |||| Sbjct 57583 GCGGACACATCAAACACCAATCTTCGTTTGCTTCAATGCGTCGCATAAACAGATCCGGTA 57642 Query 130043 CCCACAGGGCGTACAACAAATCT----CGCGCTTTTCTATCCTCGGCACCCATGTTACGT 130098 ||| || ||||| ||||| ||| |||| ||||| ||| | | ||| |||| | Sbjct 57643 TCCAAAGTGCGTAGAACAAGTCTCGGGCGCGATTTTC-ATCTTTG---CCCGTGTTTCTC 57698 Query 130099 TTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCG 130158 || | |||||| || ||||||| |||||||||||||| | || || || | ||| Sbjct 57699 TTTGCATGAAGGAAGTCAAAAATGTCCGCGTGCCACGGTTCCAAGTATATAGCAAATGCA 57758 Query 130159 CC 130160 || Sbjct 57759 CC 57760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419719390722895