Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq62 109 5e-19 >seq62 Length=382019 Score = 109 bits (120), Expect = 5e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 114236 TTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAAT 114295 ||| |||||||| |||| || |||||||||||||||||||| || || ||||| ||| Sbjct 283227 TTGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAAT 283286 Query 114296 CTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCC 114355 ||| || | | ||| | || |||| | ||| || || | || | |||||| || Sbjct 283287 CTTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCC 283346 Query 114356 GGTCAGAGTTTTTACAAAAATCTGCATG 114383 |||||||||||| ||||||||||||||| Sbjct 283347 GGTCAGAGTTTTCACAAAAATCTGCATG 283374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 114238 GTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCT 114297 ||||||| ||| ||||||||||||| ||||| || ||||| || |||||||| || | Sbjct 284365 GTTTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTT 284424 Query 114298 TTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGG 114357 || ||| | | |||| |||||||| | ||| || || | || | ||||| |||| Sbjct 284425 TTGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGG 284484 Query 114358 TCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || || ||||| || ||||| Sbjct 284485 TCAACGTCTTGACAAATATTTGCAT 284509 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 114242 ACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTG 114301 ||||||||| || || ||||| ||||| || ||||||||||| ||||| ||| || | Sbjct 285221 ACCAGCGTAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTT 285280 Query 114302 TTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAG 114361 || | | ||||| | ||| | | ||||| || | || | |||||| || || || Sbjct 285281 CTTCACGTTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAG 285340 Query 114362 AGTTTTTACAAAAATCTGCATGGCT 114386 ||||| || ||||||||||||||| Sbjct 285341 TGTTTTCACGAAAATCTGCATGGCT 285365 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 |||||||| |||| ||||||||||| || || ||||| || || || || |||||| Sbjct 284652 TACCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCG 284711 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 || | | |||| ||||||| | || || |||| || | || |||||||| | Sbjct 284712 TCTTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTA 284771 Query 114361 GAGTTTTTACAAAAATCTGCATGGCT 114386 ||||||||||| ||||||||| || Sbjct 284772 ATGTTTTTACAAAGATCTGCATGCCT 284797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420125782386996