Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq69 190 4e-43 >seq69 Length=365491 Score = 190 bits (210), Expect = 4e-43 Identities = 263/361 (73%), Gaps = 8/361 (2%) Strand=Plus/Minus Query 42501 GAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTAC 42560 ||||| |||||||| |||||||| || |||||||| |||||| | ||||| || ||||| Sbjct 157214 GAGGCTCGCTGCTTTTACGGCTTTCAAATAGCCATCGAGAACATCCACTCGGAAATGTAC 157155 Query 42561 GCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||| | |||| ||||| | || || |||| ||| |||||||| ||| Sbjct 157154 AGCCTGCTGATTGACACTTACATACAAGACGACGAGCAGCGCAACCATCTGTTCAACGCC 157095 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 || ||||| || || ||| ||||||||||||| |||||||| || ||||||| | Sbjct 157094 ATTGAGACCATTCCGTGCGTCAAGAAGAAGGCCGACTGGGCTCTGCGTTGGATCG-CCGA 157036 Query 42681 CCCGACG-CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTT 42739 || | | | ||||| |||| | ||||| || ||| | |||||||||||||| ||||| Sbjct 157035 CCAGCGGTCGCCGTTCAGCGACCGACTGGTGGCGTTTGCTGCCGTCGAGGGCATATTCTT 156976 Query 42740 CTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCA 42798 |||||| || ||||| || |||||||| ||| || || || |||||||| || | Sbjct 156975 CTCGGGAAGTTTTGCCTCGATATTCTGGCTAAAGAAGCGCGGCCTC-ATGCCCGGCCTGA 156917 Query 42799 CCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCC 42858 | ||| ||||| ||||| | ||||||||| || | | || | ||||||||| || Sbjct 156916 CGTTCAGCAACGAGCTCATATCCCGGGACGAGGTGC--CCT--GGTCATTGCCTGCCGCC 156861 Query 42859 T 42859 | Sbjct 156860 T 156860 Score = 127 bits (140), Expect = 4e-24 Identities = 221/318 (69%), Gaps = 5/318 (2%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| |||| | ||||| |||||||| || ||||| |||||| | || |||| || Sbjct 156831 AGGGTTTGCACTGCGACTTCGCCTGCCTGCTTTTCTC---CCACCTGAAGCGCAAGACCA 156775 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 |||||||| || | |||||| |||||| ||| || ||| |||||||||||| Sbjct 156774 GCAAGGAGCGCATCGAGCAGATCATCCGGGAGGCGGTGCTCATTGAGCAGGAGTTCCTCA 156715 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 | || |||| ||||| |||| | ||||||||| || |||||| | | ||||| Sbjct 156714 CCGAGGCGCTTCCCGTCGACCTGATTGGCATGAACTGCGTACTCATGCGTCAATACATAG 156655 Query 43009 AGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCT-CAGCCGCCTCTACAACACGCCG 43067 ||||||| ||||||| | | ||| | | || | || | | | ||||| | Sbjct 156654 AGTACGTAGCCGACCGTTTGCTG-GTCGAATTGAACTGCGACAAGATATACAAGGTTGAG 156596 Query 43068 TGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAG 43127 || |||||||| ||||| | || ||| |||| || ||||||||||||||||| | | Sbjct 156595 AATCCGTTCGACTTCATGGAAATGATATCGCTGGAAGGTAAGACCAACTTTTTCGAAAGG 156536 Query 43128 CGCGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 156535 AAGGTGGGCGAGTACCAG 156518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944319333464080