Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq62 118 3e-21 seq38 104 6e-17 >seq62 Length=382019 Score = 118 bits (130), Expect = 3e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 288326 ATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGA 288385 |||| || || || |||||||| |||||||| || || || || || ||||| | Sbjct 283226 ATTGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAA 283285 Query 288386 TTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCC 288445 | |||| ||||||||||| || | |||| || ||| ||||||||||||||||| |||| Sbjct 283286 TCTTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCC 283345 Query 288446 CGGTCAGAGTCTTGACGAATATCTGCAT 288473 |||||||||| || || || |||||||| Sbjct 283346 CGGTCAGAGTTTTCACAAAAATCTGCAT 283373 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 288329 GTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTT 288388 |||| || |||||||| |||||||| || | ||| || || ||||| || ||||||| Sbjct 284365 GTTTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTT 284424 Query 288389 TCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGG 288448 | |||||||| || || || | ||| || ||| ||||||||||| || || || |||| Sbjct 284425 TTGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGG 284484 Query 288449 TCAGAGTCTTGACGAATATCTGCATT 288474 ||| |||||||| ||||| |||||| Sbjct 284485 TCAACGTCTTGACAAATATTTGCATT 284510 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 288363 TGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||| || ||||| || || || ||||| ||||||||||| || || | ||| || ||| Sbjct 282985 TGGTATGCCTTCCTTGTCTTGAATTTTAGCTTTCACGTTCTCAATCGTATCTGACGGTTC 283044 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||||||||||||||| | ||| ||||||||||| ||||| Sbjct 283045 GACCTCCAAAGTGATCGTCTTCCCGGTTAAAGTTTTGACGAATATTTGCAT 283095 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || || | ||||||||| ||||| || ||||| ||||| ||||| Sbjct 283801 TTACCAGCAAATATTAACCGCTGTTGATCCGGCGGGATGCCCTCTTTGTCCTGTATTTTA 283860 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | |||||| ||||| |||| ||| || ||| |||||||||||||| || || || || Sbjct 283861 GTTTTCACATTTTCAATAGTGTCGGACGGTTCCACTTCGAGCGTGATTGTTTTTCCAGTG 283920 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| Sbjct 283921 AGCGTTTTAACAAATATTTGCAT 283943 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 || || || || || |||||||| ||| | ||||| ||||| || || |||||||| Sbjct 284083 TTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTT 284142 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 | ||||||||||| || | || | ||| ||||| ||||| || || || || ||| Sbjct 284143 GTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTC 284202 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| ||||| Sbjct 284203 AGAGTTTTGACAAATATTTGCAT 284225 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||| |||||||||||| ||| ||||| || ||||| || || |||| Sbjct 284654 CCAGCGAAGATTAGACGCTGTTGATCGGGTGGAATTCCCTCCTTATCTTGAATCTTCGTC 284713 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 |||||||| || |||| ||| | || || || ||||| || ||||| ||||| | Sbjct 284714 TTCACGTTATCAATAGTGTCGGAAGGCTCAACCTCCAGCGTAATAGTCTTGCCGGTTAAT 284773 Query 288454 GTCTTGACGAATATCTGCAT 288473 || || || || |||||||| Sbjct 284774 GTTTTTACAAAGATCTGCAT 284793 >seq38 Length=545037 Score = 104 bits (114), Expect = 6e-17 Identities = 230/338 (68%), Gaps = 18/338 (5%) Strand=Plus/Plus Query 325322 ATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGGCCCTCC 325381 || |||| |||||| || |||||| |||||||||| | | ||| |||||||| Sbjct 422450 ATGTATCTTGCACTAGCAGCATCCTTGCCACCCTGCAGGCGAGTACCAAACTGGCCAATA 422509 Query 325382 GGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTC 325441 || |||| | ||||| || ||||| || ||| | || ||||| | || | || || Sbjct 422510 GGTAACAGTAAATTGATATTGTTGCTGCCAACAAAGTCATGTGCCAAATTAATAATAGTT 422569 Query 325442 CCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCAACGTAACCGCTGAA 325500 || || |||||| ||||||||||| || | || || |||||| ||||| || Sbjct 422570 CCCATAAGGCTTGCTTCCCCATGGTGATACGCTGACAT-TTCAGCAACGGAACCGGCCAA 422628 Query 325501 CTGTGCAACCTTCAC--GTCGGTCGTCAAATTGCGCTTGAA--AGCTGAATATATCACTT 325556 ||| || |||||||| ||| | ||| ||| |||||||| || ||| | | |||| Sbjct 422629 CTGGGCTACCTTCACTTCTCGCTTGTC--ATTACGCTTGAAACAGGTGA--ACAGTACTT 422684 Query 325557 TCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGC----TTCGTTCCAGATCG 325612 | ||||| ||||| | |||||| || | || || |||| |||||| || Sbjct 422685 TTCGTTGTCCCGGTTTTAGACCATCCACTAAAGATGGGATGCTCCTTTCGTTGTCCATGT 422744 Query 325613 TACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTC 325650 ||| ||||||||| || || |||| | |||||| Sbjct 422745 TAC----TGAACAAAATGAGCTCTTTGTTCACGAAGTC 422778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179628962596074