Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq38 118 2e-21 >seq38 Length=545037 Score = 118 bits (130), Expect = 2e-21 Identities = 238/346 (69%), Gaps = 18/346 (5%) Strand=Plus/Plus Query 297435 TTGTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACT 297494 |||||||||| |||| |||||| || |||||| |||||||||| | | ||| |||| Sbjct 422442 TTGTGAAAATGTATCTTGCACTAGCAGCATCCTTGCCACCCTGCAGGCGAGTACCAAACT 422501 Query 297495 GGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCA 297554 |||| || |||| | ||||| || ||||| || ||| | || ||||| | || | Sbjct 422502 GGCCAATAGGTAACAGTAAATTGATATTGTTGCTGCCAACAAAGTCATGTGCCAAATTAA 422561 Query 297555 CGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGC-GCTATGCTCTGCAACGTAA 297613 || || || || |||||| ||||||||||| || | || || |||||| || Sbjct 422562 TAATAGTTCCCATAAGGCTTGCTTCCCCATGGTGATACGCTGACAT-TTCAGCAACGGAA 422620 Query 297614 CCGCTGAACTGTGCAACCTTCAC--GTCGGTCGTCAAATTGCGCTTGAA--AGCTGAATA 297669 ||| ||||| || |||||||| ||| | ||| ||| |||||||| || ||| | Sbjct 422621 CCGGCCAACTGGGCTACCTTCACTTCTCGCTTGTC--ATTACGCTTGAAACAGGTGA--A 422676 Query 297670 TATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGC----TTCGTT 297725 | ||||| ||||| ||||| | |||||| || | || || |||| |||||| Sbjct 422677 CAGTACTTTTCGTTGTCCCGGTTTTAGACCATCCACTAAAGATGGGATGCTCCTTTCGTT 422736 Query 297726 CCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTC 297771 || ||| ||||||||| || || |||| | |||||| Sbjct 422737 GTCCATGTTAC----TGAACAAAATGAGCTCTTTGTTCACGAAGTC 422778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102856218116050