Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq1 100 3e-16 seq266 98.7 1e-15 seq148 98.7 1e-15 seq62 98.7 1e-15 seq272 96.9 4e-15 seq92 95.1 1e-14 seq59 95.1 1e-14 seq126 84.2 2e-11 >seq1 Length=1771200 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 57004 TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 57063 ||||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||| Sbjct 649417 TTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCA 649358 Query 57064 CTATACTACCGAGGA 57078 ||||||||||||||| Sbjct 649357 CTATACTACCGAGGA 649343 >seq266 Length=62768 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||| Sbjct 36687 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCAC 36746 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 36747 TATACTACCGAGGA 36760 >seq148 Length=185163 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 170533 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 170474 Query 57066 ATACTACCGAGGAT 57079 |||||||||||||| Sbjct 170473 ATACTACCGAGGAT 170460 >seq62 Length=382019 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 42066 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTT 42125 ||||| ||||| ||||| ||||||||||| | ||| | | ||| ||||| ||||||| Sbjct 284367 TTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGATTTTT 284426 Query 42126 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 42185 ||| | || | | |||||| || |||||| |||| ||| || ||||| || || Sbjct 284427 GCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGGTC 284486 Query 42186 AGCGTCTTTACAAAGATTTGCATT 42209 | |||||| ||||| ||||||||| Sbjct 284487 AACGTCTTGACAAATATTTGCATT 284510 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 ||||||||||||||||| ||||| ||||||||||||||||| || | || ||| || || Sbjct 285087 CGCAACACCAAATGCAAGGTGCTTTCCTTTTGAATATTGTAGTCTGACAAAGTACGACCG 285146 Query 42054 TCATCTAGCTGCTTACC 42070 || || |||||||| || Sbjct 285147 TCCTCCAGCTGCTTGCC 285163 >seq272 Length=60726 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||| Sbjct 58706 TCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACT 58647 Query 57066 ATACTACCGAGGATTG 57081 ||||||||||||| || Sbjct 58646 ATACTACCGAGGACTG 58631 >seq92 Length=287114 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| |||| |||||||||||||||| ||||||||||||| Sbjct 98852 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 98911 Query 57067 TACTACCGAGGA 57078 |||||||||||| Sbjct 98912 TACTACCGAGGA 98923 >seq59 Length=386964 Score = 95.1 bits (104), Expect = 1e-14 Identities = 74/88 (84%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 56995 ATGAAAAATT----TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCG 57050 ||||||||| | |||| |||| | |||||||||| |||| ||||||||||||||| Sbjct 75485 ATGAAAAATACCAGTGCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCG 75544 Query 57051 GACATACTCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||||||||| Sbjct 75545 GGAATACTCACCACTATACTACCGAGGA 75572 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | ||| |||||| |||| | |||||||||||||| |||||||||||| Sbjct 72847 TCTCCCCGGCCGGGAATGGAACCCGGGTCGCTCGCGTGACAGGCGGGAATACTCACCACT 72906 Query 57066 ATACTACCGAGGA 57078 ||||||||| ||| Sbjct 72907 ATACTACCGTGGA 72919 Score = 82.4 bits (90), Expect = 8e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| |||| | |||||||||| |||| ||||||||| |||||| ||||||||| || Sbjct 75282 TCTCCCCGGCCGGTAATCGAACCCGGGTCGCCCGCGTGATAGGCGGGAATACTCACCGCT 75223 Query 57066 ATACTACCGAGGA 57078 |||||||||||| Sbjct 75222 TTACTACCGAGGA 75210 >seq126 Length=212693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||||||| | |||||||||| |||| ||||||||||||| || ||||||||||| Sbjct 92969 TTCTCCTCGGTCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGTGGGAATACTCACCAC 92910 Query 57065 TATACTACCGAGGA 57078 |||||| |||| || Sbjct 92909 TATACTGCCGAAGA 92896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543201372160720