Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq69 87.8 2e-12 seq21 87.8 2e-12 seq62 84.2 2e-11 >seq69 Length=365491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 132858 TCGTCTCTTGATATAAGCTCGTTGCTGAACGTGAGGCCGGGCATGATGCCTTTTGTTTTA 132917 ||||| | ||||| ||||||||||||||||| ||||||||||||| ||| | || Sbjct 156886 TCGTCCCGGGATATGAGCTCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCTTT 156945 Query 132918 ATAAAAAATATTGCCGCAAAACTGCCCGAAAAGAACACGCCTTCTACAATTGCAAAAGCC 132977 | | ||||| | |||||||| ||||| ||||| | ||| || || ||||| ||| Sbjct 156946 AGCCAGAATATCGAGGCAAAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACGCC 157005 Query 132978 ACCATTCG 132985 |||| ||| Sbjct 157006 ACCAGTCG 157013 >seq21 Length=749496 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 |||| ||| || || | ||||||||| ||| ||| ||||||| ||||| |||||| Sbjct 57284 TATTCCACTATCTCGGTGCACAAATTTGAGCACTTAATCGTGCCCAAGTTTTGTTGATTC 57343 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 ||||| |||||| ||||| ||||| | ||| |||| |||||||| || | ||| | Sbjct 57344 GATTTTCGGTTGCAAGCGTCCTTGTAAACCATGAACGGAGTGCCCGTCTCGATTTGCGAC 57403 Query 154746 TCAATAAT 154753 ||||| || Sbjct 57404 TCAATTAT 57411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 154872 GGACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACC 154931 ||||||||||| |||| ||||||| || | |||| |||||||| |||||| | | Sbjct 57585 GGACACATCAAACACCAATCTTCGTTTGCTTCAATGCGTCGCATAAACAGATCCGGTATC 57644 Query 154932 CACAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAA 154991 || | ||||| ||||| || || || || || || |||| |||||| |||| | Sbjct 57645 CAAAGTGCGTAGAACAAGTCTCGGGCGCGATTTTCATCTTTGCCCGTGTTTCTCTTTGCA 57704 Query 154992 TTCAAAAAATCATATATGTCGGCGTGCCACGGCTCTAAATATA 155034 | | || ||| | ||||| ||||||||||| || || |||| Sbjct 57705 TGAAGGAAGTCAAAAATGTCCGCGTGCCACGGTTCCAAGTATA 57747 >seq62 Length=382019 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || ||||| | ||||| ||||||||||| || ||||| || ||||| ||||| | |||| Sbjct 284367 TTACCGGCGAAGATGAGACGCTGCTGGTCAGGTGGAATACCCTCTTTGTCTTGGA-TTTT 284425 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| ||| | || || | |||||||| | || | || || ||||| Sbjct 284426 TGCTTTCACATTCTCAATGGTGTCGGACGGTTCCACTTCGAGCGTAATAGTTTTTCCGGT 284485 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 ||| || || || || ||||||||| Sbjct 284486 CAACGTCTTGACAAATATTTGCATT 284510 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/142 (74%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 |||||| |||| | ||||||||||| ||||||||||| ||||| ||||||||||| Sbjct 282394 CCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCTTGTATTTTCGTT 282453 Query 64364 TTTACAACCTCCACTGTAT-CACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 || ||| || | ||| | | |||| |||||||| | || | || || || ||||| Sbjct 282454 TTCACATTATCGATTGTGTCCGACGGC-TCCACTTCAAGGGTAATCGTTTTACCAGTCAA 282512 Query 64423 AGTTTTTACGAAAATTTGCATT 64444 || || || || || |||||| Sbjct 282513 CGTCTTCACAAATATCTGCATT 282534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499634288722520