Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq71 87.8 1e-12 >seq71 Length=365284 Score = 87.8 bits (96), Expect = 1e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 |||||||||||||| | || ||||||| || ||||| || | || || |||| |||| Sbjct 339904 CCGTCGCGACCGGCACGACCCGTCTCTTGGTAGTAACCTTCGATCGACTTTGGCAAACTG 339845 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGT 118294 | ||| || || || || ||||| ||||| || |||||||| || || ||||| || Sbjct 339844 TAATGGATGACGAAGCGAACGTCCGGTTTGTCAATGCCCATACCAAAGGCTATGGT 339789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381764969243352