Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq62 113 4e-20 seq69 96.9 3e-15 >seq62 Length=382019 Score = 113 bits (124), Expect = 4e-20 Identities = 116/149 (78%), Gaps = 2/149 (1%) Strand=Plus/Plus Query 138468 TTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT 138527 ||| ||||| | | |||| || ||||||||||||||||| ||||| || ||||| ||| Sbjct 283227 TTGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC-TGAA 283285 Query 138528 TTTTTGTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTAC 138586 | || || || | | ||| | || |||| || ||||| |||| ||| | |||||| | Sbjct 283286 TCTTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCC 283345 Query 138587 CAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | ||||||||||| ||||||||||||||| Sbjct 283346 CGGTCAGAGTTTTCACAAAAATCTGCATG 283374 Score = 89.7 bits (98), Expect = 5e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 |||||| | | |||| |||||| ||||| ||||| || || |||||||| || |||| Sbjct 282392 TACCGGCAAAAATTAAACGCTGCTGGTCAGGAGGAATTCCCTCTTTGTCT-TGTATTTTC 282450 Query 138533 GTTTTAATTGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 ||||| | | || | ||||| | || |||||| || | || | ||||||||||||| Sbjct 282451 GTTTTCACATTATCGATTGTGTCCGACGGCTCCACTTCAAGGGTAATCGTTTTACCAGTC 282510 Query 138592 AGAGTTTTTACAAAAATCTGCAT 138614 | || || ||||| |||||||| Sbjct 282511 AACGTCTTCACAAATATCTGCAT 282533 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 138474 ACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG 138533 ||| | | |||| || ||||| ||||| || ||||| ||||||||||| ||| |||| | Sbjct 284933 ACCAGCAAAGATCAGTCGCTGCTGGTCAGGCGGTATGCCTTCTTTGTC-CTGAATTTTAG 284991 Query 138534 -TTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCA 138592 || | | ||||| ||||| | || |||||||| | || | |||||| || |||| Sbjct 284992 CCTTCACGTTCTCCACCGTGTCCGACGGTTCCACCTCCAAAGTTATCGTTTTTCCCGTCA 285051 Query 138593 GAGTTTTTACAAAAATCTGCATG 138615 || || || |||||||||||| Sbjct 285052 ACGTCTTCACGAAAATCTGCATG 285074 >seq69 Length=365491 Score = 96.9 bits (106), Expect = 3e-15 Identities = 225/334 (67%), Gaps = 8/334 (2%) Strand=Plus/Minus Query 52196 CGAGGCGCAATACTTTTATAATTTGCAAGTGCTCATCGAGTGCGTGCACACGGAGATGTA 52255 |||||| | | |||||| || ||| | ||||||| | | ||| |||| ||||| Sbjct 157215 CGAGGCTCGCTGCTTTTACGGCTTTCAAATAGCCATCGAGAACATCCACTCGGAAATGTA 157156 Query 52256 CAATCTGCTCATTGAGCAGCTG-ATAAAAGATGAGCACGAGCGCGACACGCTGCTGAATG 52314 || ||||| ||||| || | ||| |||| || | ||||| || ||| | || | Sbjct 157155 CAGCCTGCTGATTGA-CACTTACATACAAGACGACGAGCAGCGCAACCATCTGTTCAACG 157097 Query 52315 CGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGA 52374 | | ||| | | |||||||| || ||||| | ||||| || ||||||| Sbjct 157096 CCATTGAGACCATTCCGTGCGTCAAGAAGAAGGCCGACTGGGCTCTGCGTTGGATCGC-- 157039 Query 52375 GCGAC-ACCG--CCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGt 52431 |||| | || | || | ||| || ||||||| || || ||||||||| | | Sbjct 157038 -CGACCAGCGGTCGCCGTTCAGCGACCGACTGGTGGCGTTTGCTGCCGTCGAGGGCATAT 156980 Query 52432 ttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAATGCCCGGCC 52491 | || || || || |||||| | || || | | || | | ||| | |||||||||| Sbjct 156979 TCTTCTCGGGAAGTTTTGCCTCGATATTCTGGCTAAAGAAGCGCGGCCTCATGCCCGGCC 156920 Query 52492 TGACGTTCAGCAACGAGTTGATATCGCGCGACGA 52525 ||||||||||||||||| | ||||| || ||||| Sbjct 156919 TGACGTTCAGCAACGAGCTCATATCCCGGGACGA 156886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/227 (70%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 52613 GGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGG 52672 |||||||||| || || ||||||| | || | ||||| || ||||| ||| | || Sbjct 156746 GGAGGCGGTGCTCATTGAGCAGGAGTTCCTCACCGAGGCGCTTCCCGTCGACCTGATTGG 156687 Query 52673 CATGAAC-GCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGC 52731 ||||||| ||| | || ||| | | ||||| |||| || || || ||| || |||| Sbjct 156686 CATGAACTGCGTACTC-ATGCGTCAATACATAGAGTACGTAGCCGACCGTTTGCTGGTCG 156628 Query 52732 AGCTCGGGCAGCCA-AAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATT 52790 | | | | || | ||| | ||| | | |||||||| || || ||| | | || Sbjct 156627 AATT-GAACTGCGACAAGATATACAAGGTTGAGAATCCGTTCGACTTCATGGAAATGATA 156569 Query 52791 TCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 ||||| || || ||||||||||||||||| | | || |||||||| Sbjct 156568 TCGCTGGAAGGTAAGACCAACTTTTTCGAAAGGAAGGTGGGCGAGTA 156522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496251959879760