Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq62 102 8e-17 >seq62 Length=382019 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 |||||||| |||| |||||||| ||||| || ||||| |||||||| ||||| | | Sbjct 285222 CCAGCGTAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTTC 285281 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | ||| | | ||||| ||||||||||| || | |||||| || || || Sbjct 285282 TTCACGTTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGT 285341 Query 127094 GTTTTTACAAAAATCTGCATGGCT 127117 ||||| || ||||||||||||||| Sbjct 285342 GTTTTCACGAAAATCTGCATGGCT 285365 Score = 98.7 bits (108), Expect = 9e-16 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || || ||||| |||||| ||||| || || ||||| || |||||||||||| || Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 ||| ||| | | ||||| || || | || ||||||| || | |||||| ||| Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 127088 GTCAGAGTTTTTACAAAAATCTGCATG 127114 ||||||||||| ||||||||||||||| Sbjct 283348 GTCAGAGTTTTCACAAAAATCTGCATG 283374 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 126989 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACG 127048 ||||||||||| || || ||||| |||||||| |||||| ||| | | ||||| | Sbjct 284101 CGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTTTGTCTTCACGTTTTCGATG 284160 Query 127049 GTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATC 127108 ||||||| || ||||| | || | |||||||| ||||||||||| ||||| || Sbjct 284161 GTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGTCAGAGTTTTGACAAATATT 284220 Query 127109 TGCATG 127114 |||||| Sbjct 284221 TGCATG 284226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475490796651920