Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq62 107 2e-18 seq21 84.2 2e-11 >seq62 Length=382019 Score = 107 bits (118), Expect = 2e-18 Identities = 114/149 (77%), Gaps = 1/149 (1%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||||| |||| || |||||||| |||||||||||||| || ||||||||||| | Sbjct 285222 CCAGCGTAAATCAGGCGCTGCTGGTCGGGCGGAATGCCTTCCTTGTCTTGAATTTTGTTC 285281 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | ||| | | ||| || | |||||||||||| || | |||||| || || || Sbjct 285282 TTCACGTTTTCAATCGAGTCCGACGGCTCGACTTCGAGCGTGATCGTTTTTCCCGTGAGT 285341 Query 45321 GTTTTTACAAAAATTTGCATCGC-GCGAC 45348 ||||| || ||||| ||||| || ||||| Sbjct 285342 GTTTTCACGAAAATCTGCATGGCTGCGAC 285370 Score = 86.0 bits (94), Expect = 6e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| || ||||| || || || || || ||||| |||||||| || |||| Sbjct 282685 ATCAACCGCTGCTGATCTGGTGGGATACCCTCTTTGTCTTGAATCTTCGCCTTGACATTC 282744 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || |||| ||| ||||| ||||| | || || || ||||||||||| ||| Sbjct 282745 TCTATAGTATCAGAAGGCTCCACTTCCAGAGTGATGGTCTTTCCAGTTAGAGTTTTCACA 282804 Query 45330 AAAATTTGCATC 45341 || ||||||||| Sbjct 282805 AATATTTGCATC 282816 >seq21 Length=749496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 124180 ACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTT 124239 |||| || | ||||| ||| | || || ||||||||| ||| ||||||| ||||||| Sbjct 55123 ACGGCGTGAGAAACTCACTGCTTGTTGCTCCCATGCCGACTGCATCCACTGCCCAAATTT 55064 Query 124240 TAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAG 124299 | || ||||||||||| |||| ||| |||| ||| | ||| || |||| || Sbjct 55063 TGGGCAACAACGAATCGGTCGAAGCGTACACTTCAAATATATACACACGGAGAGTTTTGT 55004 Query 124300 CCGGCGATTTTCAAGT 124315 ||||||| ||||| || Sbjct 55003 CCGGCGAATTTCAGGT 54988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451993690982680