Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq21 89.7 6e-13 >seq21 Length=749496 Score = 89.7 bits (98), Expect = 6e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 116485 ATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTG 116544 || || || ||||||||||| | |||||| ||||||||||| | |||||| || ||| | Sbjct 57293 ATCTCGGTGCACAAATTTGAGCACTTAATCGTGCCCAAGTTTTGTTGATTCGATTTTCGG 57352 Query 116545 TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACT 116596 || || || |||||||| | ||| | || || |||||||| |||| |||| Sbjct 57353 TTGCAAGCGTCCTTGTAAACCATGAACGGAGTGCCCGTCTCGATTTGCGACT 57404 Score = 86.0 bits (94), Expect = 8e-12 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Plus Query 116063 CCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 116122 ||||||||||| |||| | || |||| | | || |||||||| | ||| |||| | Sbjct 55237 CCCACATATCATACTGCAATATCCCTTTGCTAACGGGTGATCCCTCGTACGTCGCATAGG 55296 Query 116123 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAA 116182 | ||| ||| ||||| ||| ||||||| || | || || || || || || || | Sbjct 55297 GTCCCAAGTCCTTGGCCAACTCGCAGCTCGCTTCCAATGCGGCATGGTAAATGGTTTCGA 55356 Query 116183 AAATGCGAGCATTCA--TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAA 116239 |||| || ||| | ||| | || || | || || |||| || | ||| |||| Sbjct 55357 AAATATGACGATTGAGCTTGAAT--GCTTCTGCAGACTCGAACG-GATAGCGCATTAAAA 55413 Query 116240 TAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGAC 116298 |||| | |||||||| || || || || | ||| || || ||||||| |||||| ||| Sbjct 55414 TAAAAGCGTCCGCGAGCCCCTGCACTCCAATGCCTATGGGACGATGTCGCATATTGGAC 55472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613494293342280