Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq62 100 7e-16 >seq62 Length=382019 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 199484 TGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATC 199543 ||||| || || ||||| || ||||| ||||||||| ||| || || ||||||||| Sbjct 283228 TGCTTACCAGCAAAGATCAGCCGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGAATC 283287 Query 199544 TTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCC 199603 || ||||||| ||||| || || | | ||| || || | ||||||||| || || Sbjct 283288 TTCGTCTTCACGTTTTCGATCGTATCGGACGGTTCCACTTCGAGCGTGATCGTTTTCCCG 283347 Query 199604 GTGAGAGTTTTCACAAAAATTTG 199626 || ||||||||||||||||| || Sbjct 283348 GTCAGAGTTTTCACAAAAATCTG 283370 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 199486 CTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTT 199545 ||| || || || || ||||||||||| || || || ||||| || || || || Sbjct 284082 CTTACCCGCAAAAATAAGACGCTGCTGATCAGGCGGGATGCCTTCCTTGTCTTGGATTTT 284141 Query 199546 TTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGT 199605 | ||||||| ||||| |||||| | || ||| || || | ||| || || || ||||| Sbjct 284142 TGTCTTCACGTTTTCGATGGTGTCCGATGGTTCCACTTCTAGCGTTATTGTTTTGCCCGT 284201 Query 199606 GAGAGTTTTCACAAAAATTTG 199626 |||||||| ||||| ||||| Sbjct 284202 CAGAGTTTTGACAAATATTTG 284222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178896178397761