Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq62 89.7 4e-13 >seq62 Length=382019 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 39580 CCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGT 39639 ||| |||||||||| ||||||||||| | |||| |||||| ||||| ||||| | Sbjct 282956 CCGGCAAAAATTAAGCGCTGCTGATCTGGTGGTATGCCTTCCTTGTCTTGAATTTTAGCT 283015 Query 39640 TTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAA 39699 || | || | | || |||| ||| || |||||||| || || || || |||||| Sbjct 283016 TTCACGTTCTCAATCGTATCTGACGGTTCGACCTCCAAAGTGATCGTCTTCCCGGTTAAA 283075 Query 39700 GTTTTTACGAAGATCTGCATGTCG 39723 ||||| ||||| || |||||| || Sbjct 283076 GTTTTGACGAATATTTGCATGCCG 283099 Score = 86.0 bits (94), Expect = 4e-12 Identities = 73/89 (82%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||||||||| |||||||||| |||||||| || |||||||| ||||||| | Sbjct 282255 CCACCGCGCAAACGCAGGACCAAATGCAGTGTGCTTTCCTTCTGTATATTGTAATCGGAC 282314 Query 39553 AAAACGCGTTCATCGTCCAATTG-TTTCC 39580 || |||| |||| ||||| || ||||| Sbjct 282315 AAGGTGCGTCCATCCTCCAACTGCTTTCC 282343 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347362474906739