Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq69 277 2e-69 seq62 87.8 2e-12 >seq69 Length=365491 Score = 277 bits (306), Expect = 2e-69 Identities = 285/369 (77%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||||| ||| ||||| ||||||||||| |||| |||||||||||||||||| || | Sbjct 156884 CCTCGTCCCGGGATATGAGCTCGTTGCTGAACGTCAGGCCGGGCATGAGGCCGCGCTTCT 156943 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| ||||| | ||| ||||| ||||| ||||| | |||||||||||| || || | Sbjct 156944 TTAGCCAGAATATCGAGGCAAAACTTCCCGAGAAGAATATGCCCTCGACGGCAGCAAACG 157003 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 ||||||| || |||| ||||| | | | ||||||||| ||||| ||||| |||| Sbjct 157004 CCACCAGTCGGTCGCTGAACGGCGACCGCTGGTCGGCGATCCAACGCAGAGCCCAGTCGG 157063 Query 133097 CCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCT--TC 133154 |||| | ||||||||||| || || || |||||||| |||| | | ||| | || || Sbjct 157064 CCTTCTTCTTGACGCACGGAATGGTCTCAATGGCGTTGAACAGATG--GTTGCGCTGCTC 157121 Query 133155 CGAGGAACGCACGTAGGTGTCGATGAG--GGTCGAATACATTTCCGAGTGTACGTTCTCC 133212 | | | ||| ||||| || || || | |||||||||||||| | |||||| Sbjct 157122 GTCGTCTTGTATGTAAGTGTCAATCAGCAGGCTG--TACATTTCCGAGTGGATGTTCTCG 157179 Query 133213 ATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAA 133272 ||||| |||||||||||||||||||| || |||||| | |||||||||| || | || Sbjct 157180 ATGGCTATTTGAAAGCCGTAAAAGCAGCGAGCCTCGGTCGCCTGCACTTCCTGGGAAAAG 157239 Query 133273 CGCTCGACC 133281 ||||| ||| Sbjct 157240 CGCTCAACC 157248 Score = 156 bits (172), Expect = 4e-33 Identities = 143/181 (79%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 133279 ACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATG 133338 |||| |||||| || || |||||| ||| ||||| ||||||||||||| | |||| Sbjct 157302 ACCAAATTTTCAAACACTATTCCGTCGGAGGCCGCGAAGAAGGCCAGCACGTACGAGATG 157361 Query 133339 AAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACC 133398 || || ||||||| ||||||| |||||| ||| | ||||| || |||||||||| Sbjct 157362 AAGTGCTTCTCGTTGGCGTTCAATTTCTCCCAATCGGTCATGTCCCTGCTCAGGTCCACC 157421 Query 133399 TCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATAT 133458 ||||||||||||||||| || |||||||| |||||||| ||||| ||||||| |||| Sbjct 157422 TCCTCGACGGTCCAAAATGAAGCCTCGGCCTTTTTGTAGTAGCTCCAAATGTCCGGATAT 157481 Query 133459 T 133459 | Sbjct 157482 T 157482 Score = 82.4 bits (90), Expect = 8e-11 Identities = 218/331 (66%), Gaps = 4/331 (1%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| || || | || || || ||||||||||| | || ||||| || || || || || Sbjct 156503 CATTACTCCGCACTTCTGGTACTCGCCCACCTTCCTTTCGAAAAAGTTGGTCTTACCTTC 156562 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | ||| || || || || || | ||||| |||| || | | Sbjct 156563 CAGCGATATCATTTCCATGAAGTCGAACGGATTCTCAACCTTGTATATCTTGTCGCAGTT 156622 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 || ||||| |||| | |||||| ||| |||| |||||||| |||| | |||| || Sbjct 156623 CAATTCGACCAGCAAACGGTCGGCTACGTACTCTATGTATTGACGCATGAGTACGCAGTT 156682 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGC 132830 | || | ||| || || ||||| |||||||| || ||||| ||| ||||| Sbjct 156683 CATGCCAATCAGGTCGACGGGAAGCGCCTCGGTGAGGAACTCCTGCTCAATGAGCACCGC 156742 Query 132831 GTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCAC--CAAATGCTTGAAC 132888 || || ||| | | | |||| || ||| | | |||| | || || ||| Sbjct 156743 CTCCCGGATGATCTGCTCGATGCGCTCCTTGCTGGTC--TTGCGCTTCAGGTGGGAGAAA 156800 Query 132889 ATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 | || ||| || |||||||| ||||| |||| Sbjct 156801 AGCAGGCAGGCGAAGTCGCAGTGCAAACCCT 156831 >seq62 Length=382019 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||||||||| || || ||| | || || ||||| || || |||| || || | | Sbjct 284510 AATGCAAATATTTGTCAAGACGTTGACCGGAAAAACTATTACGCTCGAAGTGGAACCGTC 284451 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | | |||| |||||||| ||||||||||| ||||| | ||||| Sbjct 284450 CGACACCATTGAGAATGTGAAAGCAAAAATCCAAGACAAAGAGGGTATTCCACCTGACCA 284391 Query 38363 ACAGCGGCTCATTTACGCGGGCAAAC 38388 ||||| ||||| | ||| || |||| Sbjct 284390 GCAGCGTCTCATCTTCGCCGGTAAAC 284365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500162277614720