Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq86 107 8e-18 seq62 95.1 5e-14 >seq86 Length=307532 Score = 107 bits (118), Expect = 8e-18 Identities = 146/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 451226 GAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAA 451285 || || || || || | || || || || || ||||||| || || |||||||| ||| Sbjct 23840 GAGACGAAGACCTTCTCGCCCGAGGAGATATCGGCTATGGTGCTGACAAAAATGAAGGAA 23781 Query 451286 ACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTAT 451345 || || || || | || || || |||| || |||| || ||||| || Sbjct 23780 ACGGCGGAGGCGTACCTCGGCAAGAAGGTCACCCATGCCGTGGTTACGGTGCCCGCCTAC 23721 Query 451346 TTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGG-ACATATTGCTGGTTTAAATGT 451404 |||||||| || ||||| |||||||| || ||||| || ||| ||||||||||||| || Sbjct 23720 TTCAATGACGCGCAACGACAAGCAACCAAGGATGCGGGTACA-ATTGCTGGTTTAAGCGT 23662 Query 451405 TCTTCGAATTATTAATGAACC 451425 ||||||||| || |||||||| Sbjct 23661 TCTTCGAATCATAAATGAACC 23641 >seq62 Length=382019 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| |||| ||||| || || || || || || || | || Sbjct 283657 AATGCAGATCTTTGTGAAAACGTTGACCGGTAAGACAATAACACTGGAAGTGGAGCCTTC 283598 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| ||||||| | | || ||||||||||| ||||| || ||||||||||| || Sbjct 283597 GGATACCATTGAAAATGTGAAGACGAAAATTCAAGACAAGGAGGGCATTCCTCCTGACCA 283538 Query 391169 ACAACGTTTAATTTT 391183 |||||||||||||| Sbjct 283537 GCAACGTTTAATTTT 283523 Score = 86.0 bits (94), Expect = 2e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || || || ||||||||||||| ||||| ||||| || || | || Sbjct 282534 AATGCAGATATTTGTGAAGACGTTGACTGGTAAAACGATTACCCTTGAAGTGGAGCCGTC 282475 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | | ||| ||||| ||||| || || |||||||||||||| || Sbjct 282474 GGACACAATCGATAATGTGAAAACGAAAATACAAGACAAAGAGGGAATTCCTCCTGACCA 282415 Query 391169 ACAACGTTTAATTTT 391183 || ||||||||||| Sbjct 282414 GCAGCGTTTAATTTT 282400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975675796719764