Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq177 203 2e-46 >seq177 Length=111185 Score = 203 bits (224), Expect = 2e-46 Identities = 790/1230 (64%), Gaps = 14/1230 (1%) Strand=Plus/Minus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||||| ||||| || ||||| | || |||||||||||||| || || | || | Sbjct 80473 GTCATAACGCCACCAGCGGTTTCGATGCCCAGAGAAAGAGGAGTCACGTCCAAAAGCAAC 80414 Query 517556 ATATTTTGAAGTTTTTCAT-CAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACC 517614 | || ||| | |||| | | | || |||| ||| || || || | ||||| || Sbjct 80413 AAATCTTGGACGGCCTCATGCTTATCGCCCGACAA-AATTGCCGCCTGGACTGCAGCCCC 80355 Query 517615 ATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT 517674 || || || || ||||| || || | | | || | || || || ||||| || | Sbjct 80354 GTAGGCGACCGCCTCATCCGGGTTGATGCTCTTGTTCAATTCCTTCCCGTTGAAGAAGTC 80295 Query 517675 TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 517734 || || | | ||||| ||||| |||| ||||| ||||| ||||||| || || Sbjct 80294 CTGCAGCAGCTTTTGCACCTTCGGAATGCGAGTAGATCCGCCAACCAATACAACGTCGTG 80235 Query 517735 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGC 517794 ||||| ||||| || | ||| | || | | ||| |||||||| || | || Sbjct 80234 AACCTGGGATTTGTCTAATTTGGCGTCGCGAAGAGATTTCTCAACGGGATCCAAGGTCGA 80175 Query 517795 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 517854 | |||||||| | ||||| || |||||| || | ||||| || | ||| || Sbjct 80174 GCGGAACAAGTCGGCGCAAAGCTCCTCGAATCGGGCACGAGTAATCGTCGTGTAATAGTC 80115 Query 517855 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT-AGTGCAC 517913 || || ||||||| | || | |||||| | | ||| |||| || | | | | | Sbjct 80114 GATGCCCTCGAACAGACTGTCTATTTCAATACTTGCTTGTGTCG-AGCTGCTCAACGTTC 80056 Query 517914 GTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAA 517971 | || || ||||| || || || | || | ||| ||||| | ||||| || Sbjct 80055 GCTTGGCGCGTTCGCAAGCGGTACGCAGACGTCGCAAGGC--ACGAGGATTGCCCGACAT 79998 Query 517972 ATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAA 518031 || | || | ||| | ||||| || |||| | || || | || || || || Sbjct 79997 GTCCTTCTTGTTTTTGCGTTTGAACTCGGCAACGAAATGAGTGACCATGCGGTTGTCGAA 79938 Query 518032 ATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTC 518091 || || || || | | |||| |||| || | | |||| ||| | ||||| || Sbjct 79937 GTCCTCGCCGCCAAGGTGCGTATCACCTGCGGTGGACTTCACTTCGAATATACCATCCTC 79878 Query 518092 AAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCAT 518151 | | || || | ||||| || || || |||| ||| || || ||||||||| Sbjct 79877 GATTGTCAGAATTGACACATCGAAAGTACCGCCGCCCAGATCGAAGATCAGTACATTCCG 79818 Query 518152 TTCT-TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAA 518210 ||| ||| ||||| || | ||||| || | ||| ||||| || |||||||| | Sbjct 79817 CTCTCCTGT-ACCCTTTTTGTCTAATCCATAGGCGATAGCGGCAGCCGTCGGTTCATTGA 79759 Query 518211 TAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTG 518270 |||| | || |||||| || |||| || | ||||| || || || || || ||||| | Sbjct 79758 TAATGCGCAGAACATTTAGGCCAGATATAGTACCTGCGTCCTTTGTTGCCTGCCTTTGAG 79699 Query 518271 AATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAG 518330 ||||||| || || || ||||| ||||| |||||||| | || | || || | |||| Sbjct 79698 AATCGTTGAAGTACGCCGGAACGGTAATCACGGCATCCTTCACCGCCTTGCCCAAGTAAG 79639 Query 518331 CGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG--GGGAATA 518388 | ||||| | |||||| ||| || | ||| | |||| || | | ||| | Sbjct 79638 CCTCGGCCGTCTCTTTCATCTTAACCAACACCATAGCGCTGATTTCCTCGGGCGTGAACA 79579 Query 518389 TTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAAC 518448 | |||| ||| | || |||| | | || || | || | | | || Sbjct 79578 T--CTTGTTTTCGCCCTTGTACTCCACTTGGATTTTCGGCTTTCCAGCATCGCTGACCAC 79521 Query 518449 TTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAAT 518508 || || ||||| | ||||| || || ||||| ||||| || | ||| || Sbjct 79520 CTTGAACGGCCAATGCTTCATGTCCGACTGAACGGCCGAGTCATCGTAACGCCGACCGAT 79461 Query 518509 TAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGC 518568 || || || || || |||| ||||| ||||| | || | || | |||||||| Sbjct 79460 CAAGCGCTTCGCGTCGAAAACGGTATTATGCGGATTCAAGGCGACCTGGTTCTTGGCTGC 79401 Query 518569 ATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACC 518628 |||||| ||||| | || || || || || | || || || || ||||| || || Sbjct 79400 ATCTCCGATCAGTCGCTCCGTATCCGTGAAAGCCACGTAGCTGGGCGTAGTGCGGTTGCC 79341 Query 518629 TTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGT 518688 ||||| || || ||||| || || || |||| || | || || || ||||| | || Sbjct 79340 CTGATCGTTGGCGATAATCTCTACCTTGCCATGCTGGAACACTCCAACGCAACTGTACGT 79281 Query 518689 TGTTCCTAAATCAATACCAATAGCAATTTT 518718 || || |||||||| |||| ||| |||| Sbjct 79280 CGTACCCAAATCAATGCCAACAGCGTTTTT 79251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780738883996198