Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichuris_20muris_20[genbank_20GCA_5F000612645.1_202014-03-26] 1,683 sequences; 84,405,302 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq177 334 1e-86 seq86 143 3e-29 seq38 91.5 2e-13 >seq177 Length=111185 Score = 334 bits (370), Expect = 1e-86 Identities = 826/1231 (67%), Gaps = 34/1231 (3%) Strand=Plus/Minus Query 6926 GTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAAC 6985 ||||||| ||||| ||||||| || ||||| ||||| ||||||||||| || ||| Sbjct 80473 GTCATAACGCCACCAGCGGTTTCGATGCCCAGAGAAAGAGGAGTCACGTCCAAAAGCAAC 80414 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | ||||| || | || | | || |||| || || || || ||||| | |||||| Sbjct 80413 AAATCTTGGACGGCCTCATGCTTATCGCCCGACAAAATTGCCGCCTGGACTGCAGCCCCG 80354 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || |||||||||||||| ||||| || | || |||| ||| || ||||| || | ||| Sbjct 80353 TAGGCGACCGCCTCATCCGGGTTGATGCTCTTGTTCAATTCCTTCCCGTTGAAGAAGTCC 80294 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 | || | ||| | ||||| || || || ||||| || ||||| || | || | Sbjct 80293 TGCAGCAGCTTTTGCACCTTCGGAATGCGAGTAGATCCGCCAACCAATACAACGTCGTGA 80234 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || | ||||| || | || | ||| ||||| | ||| || || || |||| | | | Sbjct 80233 ACCTGGGATTTGTCTAATTTGGCGTCGCGAAGAGATTTCTCAACGGGATCCA-AGGTCGA 80175 Query 7226 -CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATC 7284 ||||||||||| || || ||||| || || ||||| ||||| | || || | || Sbjct 80174 GCGGAACAAGTCGGCGCAAAGCTCCTCGAATCGGGCACGAGTAATCGTCGTGTAATAGTC 80115 Query 7285 AACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT-AACGTTC 7343 | ||| ||| | | || |||||||| ||| ||||| || | | | ||||||| Sbjct 80114 GATGCCCTCGAACAGACTGTCTATTTCAATACTTGCTTGTGTCG-AGCTGCTCAACGTTC 80056 Query 7344 GCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATAT 7403 |||| ||||| || || || || || | ||| || | |||||| || || || || || | Sbjct 80055 GCTTGGCGCGTTCGCAAGCGGTACGCAGACGTCGCAAGGCACGAGGATTGCCCGACATGT 79996 Query 7404 CTTTCTTATGTTTACGTTTAAACTCTTCAGAGA----AGTGTCGAAGGAGTCTCGAATCG 7459 | ||||| | ||| ||||| ||||| || || |||| | | | || ||| Sbjct 79995 CCTTCTTGTTTTTGCGTTTGAACTCGGCAACGAAATGAGTGACCATGCGGT----TGTCG 79940 Query 7460 AAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCT 7519 || || || || || | ||| ||||| || ||||| | || ||||| || ||||| | Sbjct 79939 AAGTCCTCGCCGCCAAGGTGCGTATCACCTGCGGTGGACTTCACTTCGAATATACCATCC 79880 Query 7520 TCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTC 7579 || || | | | || ||||| || ||||| || ||||| || || || ||||| ||| Sbjct 79879 TCGATTGTCAGAATTGACACATCGAAAGTACCGCCGCCCAGATCGAAGATCAGTACATTC 79820 Query 7580 GTATCGTCGTCT-TTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATT 7638 || || | | || || || | || || |||||||| || ||||| |||||||| Sbjct 79819 CGCTC-TCCTGTACCCTTTTTGTCTAATCCATAGGCGATAGCGGCAGCCGTCGGTTCATT 79761 Query 7639 AATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTG 7698 ||||| || ||| || ||||||| ||||| | || || || || || || | ||| Sbjct 79760 GATAATGCGCAGAACATTTAGGCCAGATATAGTACCTGCGTCCTTTGTTGCCTGCCTTTG 79701 Query 7699 CGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATA 7758 |||||||| ||||| ||||| || || | || || ||| | || ||| || | || Sbjct 79700 AGAATCGTTGAAGTACGCCGGAACGGTAATCACGGCATCCTTCACCGCCTTGCCCAAGTA 79641 Query 7759 CGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT--CGATGAAATCTCTTCAGCCGCA 7816 | || || | |||||||| || | ||||| || || || || || | || Sbjct 79640 AGCCTCGGCCGTCTCTTTCATCTTAACCAACACCATAGCGCTG--ATTTCCTCGGGCGTG 79583 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||| || |||| || || | || |||| || | || || || ||||| || | Sbjct 79582 AACATCTTGTTTTCGCCCTTGTACTCCACTTGGATTTTCGGCTT-TC--CAGCATCGCTG 79526 Query 7877 ATAACCTTATACGACCAATCTTTCATAT-CGTCTTGGACCTGTTG-GTC--CGAAAACTT 7932 | ||||| ||| ||||| ||||| | || || || | | | ||| || || Sbjct 79525 ACCACCTTGAACGGCCAATGCTTCATGTCCGACT--GAACGGCCGAGTCATCGTAA--CG 79470 Query 7933 TCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTT 7992 | ||||| | ||||| || || ||||| || || | || |||| ||| ||||| Sbjct 79469 CCGACCGATCAAGCGCTTCGCGTCGAAAACGGTATTATGCGGATTCAAGGCGACCTGGTT 79410 Query 7993 CTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGG-G 8051 ||| || || || ||||| || || || || ||||| || || ||||| | |||| | Sbjct 79409 CTTGGCTGCATCTCCGATCAGTCGCTCCGTA---TCCGTGAAAGCCACGTA-GCTGGGCG 79354 Query 8052 TCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGA 8111 | || || || || || ||||| || ||||| ||||| | | | || | || || | Sbjct 79353 TAGTGCGGTTGCCCTGATCGTTGGCGATAATCTCTACCTTGCCATGCTGGAACACTCCAA 79294 Query 8112 CGCACGAATACGTTGTTCCTAAATCAATACC 8142 |||| ||||| || || |||||||| || Sbjct 79293 CGCAACTGTACGTCGTACCCAAATCAATGCC 79263 >seq86 Length=307532 Score = 143 bits (158), Expect = 3e-29 Identities = 333/490 (68%), Gaps = 19/490 (4%) Strand=Plus/Plus Query 7631 GGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCT 7690 |||||||| || || |||||| | | | |||||||| || ||||||| || || ||| Sbjct 23641 GGTTCATTTATGATTCGAAGAACGCTTAAACCAGCAATTGTACCCGCATCCTTGGTTGCT 23700 Query 7691 TGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTA 7750 |||||||||| || || |||||||| || ||||| || || || | ||||| ||||| Sbjct 23701 TGTCGTTGCGCGTCATTGAAGTAGGCGGGCACCGTAACCACGGCATGGGTGACCTTCTTG 23760 Query 7751 CCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCA 7810 ||||| |||| ||||| | || |||||||| || || ||||| | || ||||| || Sbjct 23761 CCGAGGTACGCCTCCGCCGTTTCCTTCATTTTTGTCAGCACCATAGCCGATATCTCCTCG 23820 Query 7811 GCCGCAAACTGTTTCGTTTC---ACCGTTAAAATCAACTTCAATCATG-GGTTTATCCGC 7866 | || || ||||| || ||| | | ||||||| | || ||||| || Sbjct 23821 GGCGAGAAGGTCTTCGTCTCCTTACC---TACGGCGACTTCAA-CGTGCGGTTT----GC 23872 Query 7867 AGCACCG-GGGATAACCTTATACGACCA-ATCTTTCATATCGTCT-TGGACCTGTTGGTC 7923 | || | | | |||| ||| ||| || || | || || | ||| || ||| Sbjct 23873 CGGACTGTTCCACCAACTTAAACGGCCACATTTTGCGGTCCGCCTGTAAACC--TTTGTC 23930 Query 7924 CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTC-ATGG 7982 ||| | | | ||||| | ||||| ||||||||||| ||||||| || ||| ||| Sbjct 23931 CGACCATTCCCGACCGATCATTCGCTTGGCATCAAAAACAGTGTTTTCTGGATTCGATGT 23990 Query 7983 CTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGT 8042 | || ||||| |||||||| || || ||||| || | ||| || || || | Sbjct 23991 C-AACTGATTCTTTGCCGCGTCGCCTATTAGACGCTCGCCCTCGGGCGTGAATGCCACAT 24049 Query 8043 ACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCC 8102 | || || || | || || || |||||||| || || ||||| || ||| | |||| Sbjct 24050 AGGAAGGAGTGATCCGGTTGCCCTGGTCGTTAGCTATTATTTCGACTCGGCCATTTTTAA 24109 Query 8103 AGACGCCGAC 8112 | || ||||| Sbjct 24110 AAACACCGAC 24119 >seq38 Length=545037 Score = 91.5 bits (100), Expect = 2e-13 Identities = 125/173 (72%), Gaps = 4/173 (2%) Strand=Plus/Plus Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAA--CTGAAAGACCAGCA 184288 ||||||| | | |||||||||||||| || |||||||| || | ||||| || || Sbjct 423556 TTTACCCTTCAAAGGAAAAACACCGTAGTGGTCACGACCGACCACGCTGAA--TCCCGCC 423613 Query 184289 ATTGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGT 184348 | |||||| || ||||| ||||| ||||| || | || | || || | || | | Sbjct 423614 ACTGCAAGCGTCTTTGCTGAATCGCCTTCAGTTAAGATCAAGGTGCAGGCGCGTGAATTT 423673 Query 184349 GTGGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCCGTTATTTTTGA 184401 | || || |||| ||||||||| || ||||| |||||||| | || ||||| Sbjct 423674 TTTGTGCCAGCTTCATTGGCATCTTCCAGTTTAGGAATACCTTTGATCTTTGA 423726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635119438393720